Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LG279_RS15150 Genome accession   NZ_CP085249
Coordinates   2939254..2941599 (-) Length   781 a.a.
NCBI ID   WP_404428825.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain ABH-543     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2934254..2946599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG279_RS15130 (LG279_15090) - 2935254..2935451 (+) 198 WP_404428823.1 hypothetical protein -
  LG279_RS15135 (LG279_15095) dtd 2935690..2936130 (-) 441 WP_404347038.1 D-aminoacyl-tRNA deacylase -
  LG279_RS15140 (LG279_15100) - 2936147..2938345 (-) 2199 WP_404428824.1 RelA/SpoT family protein -
  LG279_RS15145 (LG279_15105) - 2938727..2939239 (-) 513 WP_010195994.1 adenine phosphoribosyltransferase -
  LG279_RS15150 (LG279_15110) recJ 2939254..2941599 (-) 2346 WP_404428825.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LG279_RS15155 (LG279_15115) - 2941733..2941888 (-) 156 WP_404428826.1 hypothetical protein -
  LG279_RS15160 (LG279_15120) - 2942403..2942726 (-) 324 WP_404428827.1 lipopolysaccharide assembly LapA domain-containing protein -
  LG279_RS15165 (LG279_15125) - 2942744..2943634 (-) 891 WP_404428828.1 cation diffusion facilitator family transporter -
  LG279_RS15170 (LG279_15130) secDF 2943752..2946001 (-) 2250 WP_404428829.1 protein translocase subunit SecDF -
  LG279_RS15175 (LG279_15135) - 2946178..2946459 (-) 282 WP_169292471.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 781 a.a.        Molecular weight: 88026.17 Da        Isoelectric Point: 4.8461

>NTDB_id=616361 LG279_RS15150 WP_404428825.1 2939254..2941599(-) (recJ) [Sutcliffiella horikoshii strain ABH-543]
MLASKSRWNVNESSMEQVEQLAQSLEIAPLIASLLVNRGFDTIDAAKEFLYTNDQEFHDPFLMEDMDKLVERVNQAIAKE
EKILVFGDYDADGVSSTTVMVTALREIGALVDFYIPNRFTEGYGPNENAFKQAKENGYSVIITVDTGISAINEAKVAKEL
GMDLIITDHHEPGPELPDAFAIIHPKKETCSYPFDDLAGVGVAYKVAHALLGKNPEHLLEVAAIGTIADLVPLVGENRLL
ASKGIKKMQQTTRVGLKALLQKCGVELHTVTEETVGFSIGPRINAVGRLDNADPAVHLLMTNDPEEAKMLAEEMESYNKE
RQQIVTQITEEAIQQVEEKYPPEDNGFIIVEGNNWNAGVIGIVASRLVDRFYRPTIVLSLDEDKGLAKGSARSIAGFDLF
ENLSECRDILPHFGGHPMAAGMTLKIEDVNDLRQRMNQKALEILTDEDFTPITDVDIECKVEEVTLATIEQLEMLAPFGV
SNPKPKVLVKGVLPQQIRQIGNKSNHLKLVIEQDGSSLDCVGFGFGETYHHVSPGASLDVLGELSINEWNNFRKPQLFLK
DIRVTDWQLFDIRSIKQLNQTLNGIDKTKLHILYFNESTLEEINLHADLRPYANMVTNDTKEDLTGKYVVILDIPSEEAL
LSNLLENSTPERIYASFYQKENHFFSTIPTREHFKWFYALLAKKGSFDLRKHAEDIAKHRGWSKETVDFISQVFFDLEFV
TIDKGFIALNHAAKKRDFEESPTYRKKQQQVMLENLFLYSSYKQLKVWFDQHLTKQCTVHS

Nucleotide


Download         Length: 2346 bp        

>NTDB_id=616361 LG279_RS15150 WP_404428825.1 2939254..2941599(-) (recJ) [Sutcliffiella horikoshii strain ABH-543]
TTGTTAGCTTCTAAATCAAGATGGAATGTAAATGAATCGAGTATGGAACAGGTTGAGCAATTAGCACAGTCTTTAGAGAT
TGCCCCTCTTATTGCTTCCCTTTTGGTAAACAGAGGGTTTGACACGATAGATGCAGCAAAAGAATTTTTATATACAAATG
ATCAAGAGTTTCATGATCCTTTTTTAATGGAGGATATGGACAAGCTTGTGGAGAGAGTAAATCAAGCGATAGCAAAGGAA
GAGAAGATCCTTGTGTTTGGCGACTATGATGCAGATGGAGTCAGCAGCACCACCGTTATGGTGACTGCGTTACGAGAAAT
CGGTGCACTGGTTGATTTTTATATCCCAAACCGTTTTACAGAGGGCTATGGACCAAATGAAAATGCCTTTAAACAAGCAA
AAGAAAACGGATATTCTGTTATTATCACAGTCGACACAGGAATCTCCGCCATCAATGAAGCAAAAGTGGCAAAAGAACTA
GGGATGGACCTTATCATCACTGACCACCATGAACCTGGACCAGAATTGCCTGATGCTTTTGCGATCATTCACCCTAAAAA
AGAAACTTGCTCTTACCCGTTTGATGACCTTGCGGGTGTTGGTGTTGCCTACAAGGTCGCGCATGCACTCCTAGGGAAAA
ATCCAGAGCACCTCCTTGAAGTGGCAGCCATCGGTACCATTGCCGATTTGGTCCCATTAGTCGGGGAGAACAGATTGCTT
GCCTCTAAAGGAATCAAAAAGATGCAACAGACCACACGTGTCGGTTTAAAGGCGCTTCTTCAAAAATGCGGAGTGGAATT
GCATACGGTAACAGAAGAGACAGTAGGGTTTTCGATCGGACCGAGAATCAATGCGGTAGGGCGACTGGACAATGCAGACC
CGGCAGTTCATCTTCTTATGACAAATGATCCGGAAGAAGCCAAAATGCTTGCAGAGGAAATGGAAAGTTACAACAAAGAG
AGACAGCAAATTGTGACCCAGATTACCGAAGAAGCCATTCAACAGGTGGAAGAGAAATACCCGCCAGAGGATAATGGTTT
TATTATTGTGGAGGGAAATAATTGGAATGCTGGAGTGATCGGGATTGTGGCATCACGCCTTGTGGACCGTTTTTACCGAC
CAACCATCGTGCTTAGCCTTGATGAGGATAAAGGGTTGGCAAAAGGTTCTGCGCGTTCCATTGCCGGATTTGATCTCTTT
GAAAACCTTTCGGAATGCCGGGATATTTTGCCTCATTTCGGCGGACATCCAATGGCGGCCGGGATGACGTTGAAAATAGA
AGATGTAAATGATCTCAGACAACGAATGAATCAAAAGGCGTTAGAAATTCTGACAGATGAAGATTTCACTCCTATTACAG
ACGTTGATATTGAATGCAAAGTGGAAGAGGTAACACTTGCAACAATAGAGCAGTTGGAAATGCTTGCTCCATTCGGAGTG
TCCAATCCAAAACCAAAAGTGCTGGTAAAAGGTGTCTTGCCACAACAAATTCGCCAAATTGGAAACAAAAGTAACCATCT
GAAACTGGTCATTGAACAGGATGGCAGTTCACTAGATTGTGTAGGCTTTGGGTTTGGAGAAACGTATCATCACGTCTCGC
CTGGGGCATCCCTTGACGTTTTGGGAGAACTCTCTATCAATGAATGGAACAATTTCCGCAAGCCTCAGCTTTTTTTGAAA
GATATCAGAGTGACAGATTGGCAGCTTTTTGATATCCGTTCCATTAAACAGTTAAATCAAACGCTAAATGGAATAGATAA
AACAAAACTCCACATCCTATATTTTAATGAATCTACTTTGGAAGAAATTAATCTGCATGCTGATTTACGACCATATGCAA
ATATGGTAACAAATGATACTAAAGAAGATTTGACAGGAAAGTATGTTGTCATCTTGGATATCCCTTCTGAAGAAGCGCTC
CTATCAAATTTATTAGAAAATAGTACGCCTGAGCGAATCTATGCGTCCTTTTATCAAAAGGAGAACCATTTCTTTTCTAC
CATCCCGACGAGAGAACACTTTAAATGGTTTTACGCATTACTTGCTAAAAAAGGGTCCTTTGACCTTAGAAAACATGCAG
AAGATATTGCCAAACATCGCGGCTGGTCAAAAGAAACAGTGGATTTCATATCACAGGTGTTTTTTGACTTAGAATTTGTT
ACAATAGACAAGGGTTTTATCGCATTAAACCATGCAGCGAAAAAAAGGGACTTTGAAGAGTCTCCAACTTATCGTAAAAA
GCAACAGCAAGTGATGCTTGAAAACTTGTTTTTATATTCTTCATATAAACAATTAAAAGTGTGGTTTGATCAGCATCTAA
CCAAGCAATGCACTGTTCATTCATAG

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(315-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.044

99.744

0.539