Detailed information NTG0616360

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: LG279_RS15050
• Genome accession: NZ_CP085249
• Coordinates: 2917996..2920398 (-)
• Length: 800 a.a.
• NCBI ID: WP_404428812.1
• Uniprot ID: -
• Organism: Sutcliffiella horikoshii strain ABH-543
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2912996..2925398

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG279_RS15020 (LG279_14980)	-	2913321..2914679 (-)	1359	WP_404433526.1	NAD(P)-dependent oxidoreductase	-
LG279_RS15025 (LG279_14985)	-	2914811..2915701 (-)	891	WP_223490328.1	nitrilase-related carbon-nitrogen hydrolase	-
LG279_RS15030 (LG279_14990)	-	2916260..2916415 (-)	156	WP_010196047.1	YrzQ family protein	-
LG279_RS15035 (LG279_14995)	-	2916438..2916632 (-)	195	WP_047969446.1	hypothetical protein	-
LG279_RS15040 (LG279_15000)	-	2916648..2917121 (-)	474	WP_223490330.1	PRC-barrel domain-containing protein	-
LG279_RS15045 (LG279_15005)	-	2917308..2917910 (+)	603	WP_404428811.1	hypothetical protein	-
LG279_RS15050 (LG279_15010)	recD2	2917996..2920398 (-)	2403	WP_404428812.1	ATP-dependent RecD-like DNA helicase	Machinery gene
LG279_RS15055 (LG279_15015)	-	2920417..2921073 (-)	657	WP_404428813.1	tetratricopeptide repeat protein	-
LG279_RS15060 (LG279_15020)	mnmA	2921161..2922276 (-)	1116	WP_404428814.1	tRNA 2-thiouridine(34) synthase MnmA	-
LG279_RS15065 (LG279_15025)	-	2922508..2923659 (-)	1152	WP_404428815.1	cysteine desulfurase family protein	-
LG279_RS15070 (LG279_15030)	cymR	2923707..2924123 (-)	417	WP_088018959.1	cysteine metabolism transcriptional regulator CymR	-
LG279_RS15075 (LG279_15035)	-	2924156..2924830 (-)	675	WP_404428816.1	YitT family protein	-

Sequence

Protein

• Length: 800 a.a.
• Molecular weight: 90005.22 Da
• Isoelectric Point: 4.8231

>NTDB_id=616360 LG279_RS15050 WP_404428812.1 2917996..2920398(-) (recD2) [Sutcliffiella horikoshii strain ABH-543]
MKDQKQQSSLDLFEENEKFIKGSHLVTIFHNESNMYSVVRIRVTETNVAYDEKEAVVTGYFPRIHEDETYIFFGQMKEHP
RFGLQFHVEHFRKDIPQTRHGIVQYLSSDLFSGIGRKTAEKIADALGENAISKILENPSVLDSIPKLSGDKAKSLYDTLM
EHQGLEQVMIALSQFGFGPQLSMKIYQAYKDQTIETLQKNPYELVETVEGIGFARADELGNHFGISGNHPDRIRAGCLYM
LEQHSMQEGHCYVFEDQLTEAVVRLLNEKQHGLVAESDISREIMQLTEEGKLKAEEGKVYLPSLYFSEQGVVTNIKRVLE
QTQYADQFPESEFLLALGELEDRLKVQYAPSQKEAIQQALMTPMLLLTGGPGTGKTTVIKGIVELYADLHGCSLEPNDYS
KDDPFPIMLVAPTGRAAKRMSEATGLPSLTIHRLLGWNGSEGFQHDEENPISGKLLIVDEVSMVDIWLANQLFKSLPEDI
QVVLVGDEDQLPSVGPGQVLKDLLASRVIPTVQLTDIYRQADGSSIIELAHDMKDGAVPRDISSGQKDRSFIKCGQSQIL
DVVKKVCANAQSKGYTARDIQVLAPMYRGTAGIDKLNEMLQELFNPKSDQRRELSFGNVVYRTGDKVLQLVNQPESHVFN
GDIGEVVSIFYAKENTEKQDMVIVSFDGNEVTYTKQDLGQITHAYCCSIHKSQGSEFPIVVLPVVKSYYRMLRRNLLYTA
VTRAKRFLILCGEEEALKLGVQRADEMARQTSLKERLQSKESGTIPDEEVVDPVLQEVPFWKDANIGMENVSPYDFMDEE

Nucleotide

• Length: 2403 bp

>NTDB_id=616360 LG279_RS15050 WP_404428812.1 2917996..2920398(-) (recD2) [Sutcliffiella horikoshii strain ABH-543]
ATGAAGGACCAAAAGCAGCAATCCTCACTCGATTTGTTCGAGGAAAATGAAAAGTTTATTAAAGGATCGCATCTTGTCAC
CATCTTCCATAATGAATCCAATATGTATTCAGTGGTGCGGATCAGAGTGACGGAGACGAATGTTGCGTATGATGAAAAAG
AAGCGGTCGTTACTGGTTATTTCCCTCGCATTCATGAAGACGAGACATACATATTTTTTGGACAGATGAAGGAACATCCT
CGTTTTGGGCTTCAATTTCATGTAGAGCACTTTCGTAAGGACATTCCACAAACACGACACGGTATTGTCCAATATCTATC
AAGCGATTTGTTTTCAGGCATTGGAAGAAAAACGGCGGAAAAAATTGCAGATGCACTTGGTGAAAATGCCATTTCCAAAA
TACTTGAGAATCCTTCTGTGTTGGATTCCATCCCAAAGCTTTCCGGTGATAAAGCGAAATCGCTATATGACACGTTGATG
GAACATCAAGGGTTGGAACAGGTCATGATTGCCTTGTCGCAGTTCGGTTTTGGCCCGCAATTGTCCATGAAAATTTATCA
GGCCTACAAAGATCAGACGATTGAAACGCTCCAAAAGAACCCGTACGAACTTGTGGAAACAGTAGAGGGTATTGGCTTTG
CCAGAGCAGATGAACTTGGAAATCACTTCGGGATATCCGGAAATCATCCCGACCGCATCAGGGCAGGCTGCCTGTATATG
CTGGAACAGCATTCAATGCAGGAAGGTCACTGTTACGTGTTTGAAGACCAGCTTACTGAAGCGGTCGTCAGACTTTTAAA
CGAAAAGCAGCATGGCCTTGTTGCAGAGTCTGACATTTCTCGGGAAATTATGCAATTGACTGAAGAAGGAAAGCTTAAAG
CGGAAGAAGGGAAAGTGTATTTACCTAGCCTCTATTTTTCAGAGCAAGGTGTGGTTACCAATATCAAAAGGGTGTTGGAG
CAAACTCAATATGCCGACCAGTTTCCTGAGTCAGAATTCCTCCTTGCCTTAGGTGAATTAGAAGACAGATTGAAGGTACA
GTATGCTCCTTCGCAAAAAGAAGCCATACAGCAAGCATTAATGACTCCCATGCTTCTTTTGACAGGTGGGCCAGGAACAG
GTAAAACGACTGTTATTAAAGGAATCGTTGAACTATACGCAGACCTTCATGGTTGTTCATTGGAACCTAATGATTACAGC
AAGGATGATCCCTTTCCGATTATGCTTGTCGCCCCAACAGGCCGTGCTGCCAAACGCATGAGCGAAGCGACTGGGCTGCC
TTCTCTGACTATTCACAGGCTACTCGGTTGGAATGGTTCGGAAGGGTTTCAGCATGACGAAGAAAACCCCATCTCAGGTA
AGCTTTTGATTGTGGATGAAGTATCAATGGTGGATATTTGGCTTGCCAATCAACTGTTCAAATCTCTCCCCGAGGATATA
CAAGTCGTATTAGTGGGAGATGAAGATCAGCTTCCTTCCGTTGGTCCGGGTCAAGTATTGAAGGACTTACTCGCTTCAAG
AGTGATTCCTACTGTCCAATTGACTGATATCTACAGACAGGCAGATGGTTCCTCCATCATTGAATTGGCCCACGATATGA
AGGACGGTGCAGTGCCAAGAGACATTTCATCTGGACAGAAAGACCGTTCTTTTATCAAATGCGGACAGTCGCAAATATTG
GATGTAGTAAAAAAAGTATGTGCAAACGCGCAAAGCAAGGGCTATACTGCCCGCGATATCCAGGTGCTTGCACCAATGTA
CAGAGGGACAGCGGGAATAGATAAACTTAATGAAATGCTTCAGGAGCTTTTCAATCCTAAAAGTGACCAGCGGCGTGAAT
TAAGTTTCGGCAATGTTGTATACCGGACCGGAGATAAAGTGCTGCAGCTTGTCAATCAACCGGAAAGTCATGTGTTCAAC
GGTGACATAGGTGAAGTTGTTTCCATCTTTTATGCGAAAGAAAATACCGAAAAACAGGACATGGTCATCGTATCCTTTGA
TGGCAATGAGGTTACTTATACGAAGCAAGATCTCGGGCAGATCACCCATGCATATTGTTGTTCCATACATAAATCTCAAG
GAAGTGAGTTTCCGATTGTGGTATTGCCCGTAGTGAAAAGTTATTACAGGATGCTGCGGCGTAATCTACTGTACACTGCT
GTAACTCGTGCTAAGCGTTTTTTAATTCTTTGCGGCGAAGAAGAAGCATTAAAACTAGGCGTGCAACGCGCCGATGAAAT
GGCAAGGCAAACTTCCTTGAAAGAAAGGCTTCAATCAAAAGAGTCCGGAACTATACCAGACGAGGAAGTCGTTGATCCTG
TACTTCAAGAAGTCCCTTTTTGGAAAGATGCTAACATTGGCATGGAAAATGTCAGTCCATATGATTTTATGGATGAAGAA
TAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (596-666)

• AAA domain (AAA_30) (348-556)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (683-731)

• Helix-hairpin-helix containing domain (HHH_RecD2) (161-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	63.67	100	0.637