Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LG307_RS16040 Genome accession   NZ_CP085237
Coordinates   3059119..3061464 (-) Length   781 a.a.
NCBI ID   WP_404444003.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain ADH2-198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3054119..3066464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG307_RS16025 (LG307_15965) dtd 3055553..3055993 (-) 441 WP_404443993.1 D-aminoacyl-tRNA deacylase -
  LG307_RS16030 (LG307_15970) - 3056014..3058212 (-) 2199 WP_404443997.1 RelA/SpoT family protein -
  LG307_RS16035 (LG307_15975) - 3058592..3059104 (-) 513 WP_404444000.1 adenine phosphoribosyltransferase -
  LG307_RS16040 (LG307_15980) recJ 3059119..3061464 (-) 2346 WP_404444003.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LG307_RS16045 (LG307_15985) - 3061487..3061759 (-) 273 WP_404444005.1 hypothetical protein -
  LG307_RS16050 (LG307_15990) - 3061988..3062308 (-) 321 WP_404444006.1 lipopolysaccharide assembly LapA domain-containing protein -
  LG307_RS16055 (LG307_15995) - 3062330..3063220 (-) 891 WP_404444008.1 cation diffusion facilitator family transporter -
  LG307_RS16060 (LG307_16000) secDF 3063345..3065594 (-) 2250 WP_404444010.1 protein translocase subunit SecDF -
  LG307_RS16065 (LG307_16005) - 3065771..3066052 (-) 282 WP_404444013.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 781 a.a.        Molecular weight: 88058.11 Da        Isoelectric Point: 4.7525

>NTDB_id=616233 LG307_RS16040 WP_404444003.1 3059119..3061464(-) (recJ) [Sutcliffiella horikoshii strain ADH2-198]
MLASKSRWNVNESSSEQVEQLAASLDIAPLIASLLVNRGFDTIDTAREFLYTDDQEFHDPFLMEDMDKLVERVNRAITNE
EKILVFGDYDADGVSSTTVMVTALREVGALVDFYIPNRFTEGYGPNENAFKQAKENGYSVIITVDTGISAIYEAKVAKEL
GVDLIITDHHEPGPELPDAFAIIHPKKETCSYPFDDLAGVGVAYKVAHALLGKNPEHLLDVAAIGTIADLVPLVGENRLL
ASKGIKKMQQTTRVGLKALLQKCGVELHTVTEETVGFSIGPRINAVGRLDNADPAVHLLMTNDLEEAKMLAEEMESYNKE
RQQIVTQITEEAIQQVEEKYPPEENGFIIVEGSNWNAGVIGIVASRLVDRFYRPTIVLSLDEEKGLAKGSARSITGFDLF
ENLSECRDILPHFGGHPMAAGMTLKMEDVDELRRRMNQKALEILTEEDFTPITEVDIECKVEEVTLGTIEQLEMLAPFGV
ANPKPKVLVKGVLPQQIRQIGNKSNHLKLVIEQEGTSLDCVGFGFGETYHHVSPGASLDVLGELSINEWNNFRKPQLFLK
DIRVADWQLFDIRSIKQLNQTLDGIDKNKLHILYFNESTLDEINLHAELRPYASMVTEGTYEDVTGKYIVILDIPAEEEL
LSNLLDNSTPERIYASFYQKENHFFSTIPTREHFKWFYALLAKKGSFDLKKHAEDIAKHRGWSKETVDFISQVFFDLEFV
TIDKGFIALNHAAKKRDFEESPTYRKKQQQVMLENLFLYSSYKQLKAWFDQHLTKQCTVHS

Nucleotide


Download         Length: 2346 bp        

>NTDB_id=616233 LG307_RS16040 WP_404444003.1 3059119..3061464(-) (recJ) [Sutcliffiella horikoshii strain ADH2-198]
TTGTTAGCTTCTAAATCTAGGTGGAATGTAAATGAGTCAAGTAGTGAGCAAGTTGAACAGTTAGCAGCTTCATTGGATAT
TGCCCCTCTTATTGCTTCACTTTTGGTAAACAGAGGGTTTGACACAATAGATACAGCAAGAGAATTTTTATATACAGATG
ATCAAGAATTCCATGATCCTTTTTTAATGGAGGATATGGATAAGCTTGTGGAAAGAGTAAATAGAGCAATAACAAACGAA
GAGAAGATTCTTGTGTTCGGTGATTATGATGCAGATGGAGTCAGCAGCACCACCGTTATGGTGACTGCTCTACGTGAAGT
TGGTGCACTGGTTGATTTTTATATCCCGAATCGCTTTACAGAAGGTTATGGGCCCAATGAAAATGCCTTTAAACAAGCAA
AAGAAAACGGATATTCTGTCATCATTACAGTTGATACAGGAATCTCGGCCATCTATGAGGCAAAAGTGGCGAAGGAATTA
GGGGTGGACCTTATCATTACTGACCACCATGAACCTGGTCCGGAGTTGCCTGATGCTTTTGCGATCATTCATCCTAAAAA
AGAAACGTGCTCCTACCCGTTTGATGACCTGGCTGGTGTCGGTGTTGCCTACAAAGTGGCGCATGCGTTGCTCGGAAAAA
ATCCAGAGCACCTTCTGGATGTGGCTGCCATTGGTACCATTGCAGACTTGGTTCCATTAGTTGGAGAGAATAGATTGCTT
GCGTCTAAAGGAATTAAAAAGATGCAGCAAACCACACGGGTCGGACTGAAGGCTCTTCTCCAAAAGTGTGGCGTTGAATT
GCACACCGTAACAGAAGAAACGGTAGGGTTTTCGATTGGGCCGAGAATCAATGCGGTAGGACGACTGGATAATGCAGATC
CAGCTGTACATCTCCTGATGACAAATGATCTTGAAGAAGCCAAAATGCTTGCAGAAGAAATGGAAAGTTACAACAAAGAA
AGACAGCAAATAGTGACTCAAATTACAGAAGAAGCGATCCAACAGGTGGAAGAGAAATACCCGCCTGAAGAGAATGGTTT
CATTATAGTGGAGGGAAGTAATTGGAATGCAGGAGTGATCGGGATAGTAGCCTCACGCCTCGTCGACCGCTTTTACAGGC
CGACCATCGTGCTAAGCCTTGATGAGGAAAAAGGGTTGGCAAAAGGATCTGCCCGTTCCATTACTGGTTTTGACCTCTTT
GAGAACCTTTCAGAGTGTCGTGATATTTTGCCTCATTTTGGTGGGCATCCGATGGCGGCAGGAATGACATTAAAAATGGA
AGATGTGGATGAACTCAGACGAAGAATGAATCAAAAGGCATTAGAAATTCTGACAGAGGAAGATTTCACCCCTATTACGG
AAGTGGATATTGAATGCAAGGTGGAAGAGGTAACACTTGGAACAATCGAGCAGTTGGAAATGCTTGCCCCATTCGGTGTG
GCCAATCCAAAACCGAAAGTGCTGGTTAAAGGTGTTCTGCCACAGCAAATTCGTCAAATCGGAAATAAAAGCAACCACCT
GAAACTTGTCATTGAACAGGAAGGGACTTCGCTTGATTGTGTAGGTTTTGGCTTTGGAGAAACGTATCATCATGTCTCCC
CGGGGGCTTCCCTTGACGTGTTAGGAGAACTCTCCATCAATGAATGGAACAATTTCCGCAAGCCGCAACTATTTTTAAAA
GATATCAGAGTGGCAGATTGGCAGCTGTTTGATATTCGTTCAATCAAACAATTGAATCAAACATTAGATGGAATAGATAA
AAATAAACTCCACATCCTATATTTTAACGAATCAACGCTCGATGAAATAAACCTGCATGCTGAGTTGCGACCATATGCAA
GTATGGTAACAGAGGGCACTTATGAAGATGTGACAGGAAAGTATATCGTCATCTTGGATATCCCGGCTGAAGAAGAGCTC
CTATCGAATTTATTAGATAACAGTACACCAGAAAGAATTTACGCTTCTTTCTATCAAAAGGAAAATCATTTCTTCTCTAC
GATTCCAACAAGGGAACACTTTAAATGGTTTTACGCATTACTTGCTAAAAAGGGGTCCTTTGATCTTAAAAAGCATGCAG
AAGATATAGCCAAACATCGCGGCTGGTCAAAAGAAACAGTGGATTTCATATCACAGGTGTTTTTTGACTTAGAATTTGTT
ACAATAGACAAGGGTTTTATCGCGTTAAACCATGCAGCGAAAAAACGGGACTTTGAAGAGTCTCCAACTTATCGTAAAAA
GCAACAGCAAGTGATGCTTGAAAACTTGTTTTTATACTCTTCATATAAACAATTAAAAGCGTGGTTTGATCAGCATCTAA
CCAAGCAATGCACTGTTCATTCATAG

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)

DHHA1 domain (DHHA1)

(315-438)

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.429

99.744

0.543