Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NRF20_RS30860 Genome accession   NZ_CP102361
Coordinates   6739535..6741268 (-) Length   577 a.a.
NCBI ID   WP_398628645.1    Uniprot ID   -
Organism   Streptomyces sp. R-74717     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6734535..6746268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRF20_RS30850 (NRF20_30815) - 6736349..6737452 (+) 1104 WP_398628647.1 RNA polymerase sigma factor -
  NRF20_RS30855 (NRF20_30820) - 6737604..6739535 (-) 1932 WP_413753692.1 ABC transporter ATP-binding protein -
  NRF20_RS30860 (NRF20_30825) rcrP 6739535..6741268 (-) 1734 WP_398628645.1 ABC transporter ATP-binding protein Regulator
  NRF20_RS30865 (NRF20_30830) - 6741438..6742883 (-) 1446 WP_413753693.1 FGGY family carbohydrate kinase -
  NRF20_RS30870 (NRF20_30835) - 6742954..6743253 (-) 300 WP_383962527.1 YtxH domain-containing protein -
  NRF20_RS30890 (NRF20_30855) - 6744394..6744600 (+) 207 WP_398628643.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62706.78 Da        Isoelectric Point: 5.3848

>NTDB_id=616156 NRF20_RS30860 WP_398628645.1 6739535..6741268(-) (rcrP) [Streptomyces sp. R-74717]
MLIKLLRAYLGPYKKPILILVLLQLLQTCASLYLPTLNADIIDNGVVKGDTGYILEFGGIMIAVSIAQVVCNMGAVYYGA
RTASALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVKRMRPLFRTMQERVDTVNRVLREQITGNRVIRAFVRDRYEEERFRGANNELTDVALSTGRLMAL
MFPAVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVVP
PVKPVSELRAHGHLEVRGADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEALEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALSQETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
DTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=616156 NRF20_RS30860 WP_398628645.1 6739535..6741268(-) (rcrP) [Streptomyces sp. R-74717]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGTCCGTACAAGAAACCCATCCTGATCCTGGTCCTCCTCCAACTCCTGCA
GACCTGCGCCAGCCTCTATCTGCCCACCCTGAACGCCGACATCATCGACAACGGTGTCGTCAAGGGGGACACGGGCTACA
TCCTGGAGTTCGGCGGCATCATGATCGCCGTCAGCATCGCCCAGGTGGTCTGCAACATGGGGGCCGTCTACTACGGCGCC
CGCACCGCGTCCGCCCTCGGCCGCGATGTCCGGGCGTCGGTCTTCGACCGGGTGCAGTCGTTCTCGGCGCGTGAGGTCGG
GCGGTTCGGCGCACCTTCGCTGATCACGCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTCGTGCTGATGACGTTCA
CCCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTCTCGGCCGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCATCGCGGTGAGCCTGATCGTCAAGCGGATGCGGCCACTGTTCCGCACCATGCA
GGAGCGGGTCGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGTGATC
GTTACGAGGAGGAGCGTTTCCGCGGCGCCAACAACGAGCTGACCGATGTGGCGCTGTCCACGGGCCGGCTGATGGCACTG
ATGTTCCCGGCCGTGATGACGGTCGTGAATGTGTCCTCGATCGCCGTGGTCTGGTTCGGTGCCCACCGCATCGACAGCGG
CGGCATGGAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCGAGCGTGGTTCCG
CCGGTCAAGCCGGTCAGCGAGCTGCGCGCCCACGGTCATCTGGAGGTCCGCGGCGCGGACTTCCGTTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGTCGGTGGATCTGGTGGCCCGTCCCGGCGAGACCACCGCGATCATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGACTCGTACCGCGGCTGTTCGATGTGACGGACGGCCAGGTGCTGGTCGACGGCACGGACGTACGG
ACGCTGGAGCCGGCGCTGCTGGCGAAGACCGTGAGTCTCGTTCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGAAACCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGCGCTGGAGCACGGCCTGCACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGACAGCGGCAGCGTCTG
GCGATCGCCAGGACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACCGA
CGCCGCACTGCGCGGGGCGCTCTCGCAGGAGACGGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGCTCCGGCACCCATCACGAGCTGATGGACGGCAAT
GACACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.137

100

0.406