Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LG336_RS20840 Genome accession   NZ_CP085225
Coordinates   4290643..4293009 (-) Length   788 a.a.
NCBI ID   WP_404329388.1    Uniprot ID   -
Organism   Mesobacillus maritimus strain ADH-29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4285643..4298009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG336_RS20825 (LG336_20720) dtd 4286943..4287383 (-) 441 WP_404329385.1 D-aminoacyl-tRNA deacylase -
  LG336_RS20830 (LG336_20725) - 4287698..4289893 (-) 2196 WP_404329386.1 RelA/SpoT family protein -
  LG336_RS20835 (LG336_20730) - 4290140..4290652 (-) 513 WP_404329387.1 adenine phosphoribosyltransferase -
  LG336_RS20840 (LG336_20735) recJ 4290643..4293009 (-) 2367 WP_404329388.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LG336_RS20845 (LG336_20740) secDF 4293654..4295918 (-) 2265 WP_404329389.1 protein translocase subunit SecDF -
  LG336_RS20850 (LG336_20745) - 4296261..4296557 (-) 297 WP_404329390.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88164.80 Da        Isoelectric Point: 4.9038

>NTDB_id=616059 LG336_RS20840 WP_404329388.1 4290643..4293009(-) (recJ) [Mesobacillus maritimus strain ADH-29]
MLKSRTRWVVKETDRLKAEELAVALNIAPLTASLLVNRGIDTVETARYFLFEENQSFHDPFLLKDMDILVDRVKQAIEHQ
EPILIFGDYDADGVSSTTVMMRVLVDLGANVDYYIPNRFTEGYGPNEPAFRQAAENGVKLIITVDTGISALHEADVAKEL
GIDLIITDHHEPGPTLPDAFAIIHPKLEDSVYPFRDLAGVGVAFKVAHALYGFVPEDLLEIASIGTIADLVSLTGENRLI
AKKGIQQMKRTENLGLRALLSMTKTELPSISEETVGFVIGPRINAAGRLGSADPAVQLLLTSDRDEAMMLAEEIDGLNKE
RQTLVASISEEAIAEVENHYPIKENHVLVIGKEGWNPGVIGIVASRLVEKFYRPTIVLSFDKEKGLAKGSARSIQGFDLF
KNLSTCRDILPHFGGHPMAAGMTLKLEDVDLLRQRLNALATEQLTESDLIPVTQVDLEVSLNEISLDSIGEMGQLAPYGV
DNPKPKVLIKEAQIASMRKIGANQNHLKVTLANEGASLDGIGFSLGPLHEEISPISSLSAIGELSINEWNNIRKPQIFLQ
DLAVHSWQLFDIRGLRRHEKLLDMIPAENTKWILFDNGNEAAFQRYCQNNLLKVENEEAATLADIGQKNIVLLDLPPSME
VLEKLVSGKQPARIYVHFHKEESDFFSTMPTREHFKWFYAFLAKRGAFDLKRHGEELAKYRGWTKETVEFMSQVFFDLEF
VKINNGFISLEKNVPKRDLSESKTYQKKQATFTLENELLYSSFEQLKSWFDQVIQGSVQNEEAISTWI

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=616059 LG336_RS20840 WP_404329388.1 4290643..4293009(-) (recJ) [Mesobacillus maritimus strain ADH-29]
ATGTTAAAATCCAGGACTAGGTGGGTTGTTAAAGAAACCGACCGATTAAAAGCGGAAGAATTGGCAGTTGCATTAAATAT
TGCTCCTTTGACTGCAAGCTTGCTTGTCAATCGCGGAATTGATACCGTGGAAACTGCCCGGTATTTTTTATTTGAAGAAA
ATCAATCCTTTCATGATCCATTTTTATTAAAAGATATGGATATATTAGTTGATAGAGTGAAACAAGCTATTGAACATCAA
GAGCCGATTCTAATATTCGGTGACTACGATGCGGATGGTGTGAGTTCTACAACGGTGATGATGAGAGTGTTAGTAGATTT
AGGTGCGAATGTAGACTACTATATTCCGAACCGCTTCACAGAAGGCTACGGCCCTAATGAGCCTGCTTTTAGACAAGCAG
CAGAGAATGGAGTCAAGTTGATTATTACCGTCGATACGGGGATATCAGCGCTACATGAAGCCGATGTTGCGAAGGAACTC
GGGATTGATTTAATCATTACCGATCACCATGAACCTGGGCCGACGCTTCCAGATGCATTTGCGATCATCCATCCTAAACT
TGAAGATAGTGTTTATCCATTCAGGGATCTAGCTGGTGTTGGCGTCGCTTTTAAAGTCGCTCATGCCCTTTATGGATTTG
TTCCAGAAGATTTGTTAGAAATTGCCTCAATTGGGACAATCGCTGACCTGGTTTCATTAACAGGTGAAAATCGTCTGATT
GCGAAAAAAGGGATCCAGCAAATGAAAAGAACGGAAAACCTCGGTCTAAGAGCCTTGCTTTCCATGACGAAAACCGAGTT
GCCATCTATCAGTGAAGAGACGGTTGGGTTTGTCATTGGCCCACGGATAAATGCGGCAGGACGACTAGGCAGCGCCGACC
CTGCGGTGCAACTTTTGTTAACAAGCGATCGTGATGAAGCCATGATGTTGGCTGAAGAAATAGATGGATTAAACAAAGAA
CGGCAAACGCTAGTGGCGTCAATTTCAGAGGAAGCCATTGCTGAAGTGGAAAATCATTATCCGATTAAAGAGAATCATGT
ACTCGTCATTGGCAAAGAAGGCTGGAATCCCGGTGTGATTGGGATTGTTGCTTCGCGCCTTGTTGAAAAATTTTACAGAC
CAACCATTGTCCTTAGCTTTGATAAAGAAAAAGGGTTGGCTAAAGGTTCAGCACGGAGTATTCAAGGTTTTGATTTGTTT
AAAAATCTATCCACCTGTCGAGATATTCTGCCACACTTTGGAGGGCATCCAATGGCAGCGGGAATGACGCTGAAGCTTGA
GGATGTGGATCTACTTAGACAAAGACTAAATGCTCTTGCAACTGAGCAGCTAACAGAGTCTGATTTAATTCCTGTTACCC
AAGTGGACCTTGAAGTCTCGCTAAACGAAATCTCACTAGATTCAATTGGAGAAATGGGCCAGCTTGCGCCTTACGGGGTC
GACAATCCGAAACCAAAGGTGCTCATTAAGGAAGCCCAAATTGCTTCTATGCGTAAAATTGGTGCAAATCAGAACCACTT
AAAGGTTACACTAGCTAATGAGGGTGCTTCACTAGATGGAATTGGCTTTAGTCTTGGACCACTTCACGAAGAAATATCCC
CGATATCGTCGTTATCCGCCATTGGCGAGCTGTCGATTAATGAATGGAATAATATAAGAAAACCACAAATTTTCTTGCAG
GATCTTGCTGTTCACAGCTGGCAGCTCTTTGATATTCGTGGGTTGAGACGCCATGAAAAGCTGTTGGATATGATTCCTGC
AGAAAATACAAAATGGATCTTATTTGATAATGGCAATGAAGCAGCTTTCCAACGCTATTGTCAAAATAACCTTTTGAAGG
TTGAAAATGAGGAAGCAGCTACCCTGGCAGATATCGGCCAAAAAAACATTGTGCTCCTTGATTTACCACCATCAATGGAA
GTGTTAGAAAAGCTCGTCTCAGGCAAGCAACCGGCGAGAATTTATGTTCATTTTCATAAAGAGGAAAGTGATTTCTTTAG
TACGATGCCTACAAGGGAGCATTTTAAATGGTTCTATGCTTTCTTGGCAAAAAGGGGTGCCTTTGACTTAAAGCGACATG
GTGAAGAGTTAGCAAAATACCGTGGATGGACAAAAGAAACGGTAGAATTTATGTCACAGGTGTTTTTTGACCTAGAGTTT
GTTAAAATAAACAATGGATTTATTTCCTTAGAAAAGAATGTTCCGAAAAGGGACTTATCTGAATCTAAAACCTATCAGAA
AAAACAGGCAACATTTACTCTTGAAAATGAACTGCTTTATTCATCTTTTGAGCAGTTGAAGAGTTGGTTCGACCAAGTCA
TTCAAGGGTCGGTGCAAAATGAGGAGGCAATTTCAACATGGATTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

DHH family (DHH)

(83-225)

DHHA1 domain (DHHA1)

(315-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.003

99.873

0.539