Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LG336_RS20750 Genome accession   NZ_CP085225
Coordinates   4268259..4270736 (-) Length   825 a.a.
NCBI ID   WP_404329374.1    Uniprot ID   -
Organism   Mesobacillus maritimus strain ADH-29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4263259..4275736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG336_RS20730 (LG336_20625) - 4266121..4267197 (-) 1077 WP_404329371.1 AI-2E family transporter -
  LG336_RS20735 (LG336_20630) - 4267372..4267506 (-) 135 WP_404329372.1 YrzQ family protein -
  LG336_RS20740 (LG336_20635) - 4267549..4267740 (-) 192 WP_221872033.1 hypothetical protein -
  LG336_RS20745 (LG336_20640) - 4267712..4268233 (-) 522 WP_404329373.1 PRC-barrel domain-containing protein -
  LG336_RS20750 (LG336_20645) recD2 4268259..4270736 (-) 2478 WP_404329374.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LG336_RS20755 (LG336_20650) - 4270772..4271422 (-) 651 WP_404329375.1 tetratricopeptide repeat protein -
  LG336_RS20760 (LG336_20655) mnmA 4271523..4272638 (-) 1116 WP_404329376.1 tRNA 2-thiouridine(34) synthase MnmA -
  LG336_RS20765 (LG336_20660) - 4272685..4273827 (-) 1143 WP_404329377.1 cysteine desulfurase family protein -
  LG336_RS20770 (LG336_20665) cymR 4274049..4274474 (-) 426 WP_404329378.1 cysteine metabolism transcriptional regulator CymR -
  LG336_RS20775 (LG336_20670) - 4274471..4275166 (-) 696 WP_404333245.1 YitT family protein -

Sequence

Protein


Download         Length: 825 a.a.        Molecular weight: 92602.33 Da        Isoelectric Point: 4.7082

>NTDB_id=616058 LG336_RS20750 WP_404329374.1 4268259..4270736(-) (recD2) [Mesobacillus maritimus strain ADH-29]
MDNKQEGFDLFSEQGKYIKGRPIVTIFHNEQNLYTVMRIRVDETNDEYDDNEAVVTGYFPKIHEQETYVFYGAFTDHPKF
GLQFQVTHFQKDLPQSKQGIIAYLSSDMFKGIGKKIAERIVESLGEKAISRIMENPSVLDTVPKLSSEKAKLLYDTLMEH
QGLEQVMVGLNQYGFGPQLSMKIYQAYREQAIEVIQGNPFKLVEDIEGIGFGRADELGRQLGITGSHPDRIKAACLYILE
SSSVQAGHVYMEAEDLLQQVKGILEQNEPQKIEFTEISNGLIKLGEEGKVMVEDKRVYLPSLYFSEKGLVTNIERILDQK
DYEDQFPESEFLLALGELEERTGVQYGPTQKEAIQTALMSPMMILTGGPGTGKTTVIKGIVELYAELHGCSLEINDYKQD
EPFPFLLCAPTGRAAKRMAESTGLPAVTIHRLLRWNGADGFDHDEDRQLEGKILIVDETSMVDIWLAHQLFKALPNNIQV
ILVGDEDQLPSVGPGQVLKDFLDSKRIPTVRLTDIYRQAEGSSIIELAHQIKKGALPQDLASPQPDRSFLRCGPGQISQV
VEKVVLNAKKKGYTAKDIQVLAPMYRGPAGIDRLNLLMQEIFNPNPDGSRKEIAYGDVKYRVGDKVLQLVNQPEANVFNG
DMGEIVAIFYAKENTEKQDQIIVSYEGNEVTYVKQDLSQITHAYCCSVHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAI
TRSQQFLILCGEEDAFRLGIDRADDTKRNTTLAFKLSETLPEVGDGNKPSVSEGTDKSLRAVQTLKEHEEDAEDQKDPVA
LLMSADPMIGMENLTPYDFMENGGN

Nucleotide


Download         Length: 2478 bp        

>NTDB_id=616058 LG336_RS20750 WP_404329374.1 4268259..4270736(-) (recD2) [Mesobacillus maritimus strain ADH-29]
ATGGACAACAAACAAGAGGGTTTTGATTTGTTTTCAGAACAAGGGAAATACATAAAAGGAAGACCTATCGTCACGATTTT
TCATAATGAGCAAAACTTATATACTGTTATGCGGATTCGGGTTGATGAAACCAACGATGAGTATGATGATAATGAGGCTG
TCGTTACAGGTTATTTCCCTAAAATCCACGAACAAGAAACCTATGTTTTCTATGGTGCGTTTACCGATCACCCTAAATTT
GGTCTTCAGTTTCAAGTAACTCATTTCCAAAAGGATTTGCCGCAATCAAAACAAGGAATCATTGCTTATTTGTCGAGTGA
TATGTTCAAAGGGATTGGGAAGAAGATTGCGGAGAGGATTGTTGAATCGTTAGGAGAAAAAGCGATTTCAAGGATTATGG
AAAACCCCTCAGTGCTTGATACTGTGCCAAAGCTTAGTTCTGAAAAGGCGAAATTGCTATATGATACTTTGATGGAGCAC
CAAGGCCTTGAACAAGTGATGGTCGGCTTGAATCAATATGGATTTGGTCCACAGCTATCAATGAAAATTTATCAAGCCTA
CCGTGAACAAGCGATTGAAGTAATCCAAGGAAATCCATTTAAGCTAGTCGAGGACATTGAAGGGATCGGGTTTGGCCGTG
CAGATGAACTGGGGCGCCAGCTAGGGATTACCGGCAGTCATCCTGATCGAATAAAAGCGGCTTGCCTATATATTTTGGAA
TCTTCCAGTGTACAGGCAGGGCATGTTTATATGGAGGCAGAGGATTTACTACAACAAGTAAAAGGCATTCTTGAACAGAA
CGAGCCACAAAAAATTGAGTTTACCGAAATTTCGAATGGGCTTATTAAGCTCGGAGAAGAAGGAAAGGTGATGGTTGAAG
ACAAGCGAGTTTACCTACCTTCTCTTTACTTTTCAGAAAAAGGCTTAGTGACTAATATTGAGCGAATCCTCGATCAAAAA
GATTATGAGGACCAGTTTCCTGAATCCGAATTTCTGCTTGCGCTTGGAGAGCTAGAAGAACGGACCGGAGTCCAATATGG
ACCGACGCAAAAGGAAGCAATTCAAACAGCATTAATGTCACCGATGATGATTTTAACTGGTGGTCCAGGTACAGGAAAAA
CGACGGTCATTAAAGGGATCGTTGAGCTTTATGCTGAACTTCACGGTTGTTCGCTCGAAATCAATGATTATAAACAAGAC
GAGCCTTTTCCATTTTTATTATGTGCTCCTACAGGCAGAGCAGCGAAACGGATGGCAGAATCGACAGGTCTTCCAGCAGT
CACGATTCACCGCTTGCTACGCTGGAATGGAGCAGATGGTTTTGATCATGATGAGGACCGTCAATTGGAAGGGAAAATCT
TAATTGTCGATGAAACTTCAATGGTTGATATATGGTTGGCTCATCAATTGTTTAAGGCTTTGCCAAATAACATCCAGGTC
ATTCTTGTAGGAGATGAAGACCAGCTCCCCTCAGTTGGTCCTGGACAAGTTCTCAAGGATTTTCTTGATTCTAAAAGAAT
CCCGACAGTGCGACTAACCGATATTTATCGCCAAGCGGAGGGGTCGTCGATTATCGAACTCGCCCATCAGATAAAAAAGG
GAGCATTGCCACAAGATTTAGCGTCCCCACAGCCTGATCGATCCTTTCTTCGCTGTGGCCCTGGACAAATTTCTCAGGTT
GTCGAGAAGGTAGTTTTAAATGCAAAGAAAAAAGGCTATACAGCAAAAGATATTCAAGTACTGGCCCCGATGTATCGAGG
TCCAGCGGGGATTGACCGCTTAAATCTGCTTATGCAGGAGATTTTCAACCCGAATCCCGATGGCAGTCGCAAAGAAATTG
CTTATGGCGATGTAAAATATCGAGTAGGAGATAAGGTGCTGCAACTCGTTAACCAGCCAGAGGCTAATGTTTTTAACGGC
GATATGGGGGAAATTGTTGCGATTTTTTATGCGAAGGAAAATACAGAAAAACAGGATCAAATTATTGTCTCTTATGAGGG
CAACGAAGTTACCTATGTAAAACAGGATCTCTCGCAAATTACCCATGCGTATTGTTGTTCTGTCCATAAATCGCAAGGTA
GTGAATTTCCAATCGTTATTTTACCAGTTGTGAAAAGCTATTATCGTATGCTTAGAAGAAATCTTCTTTATACAGCAATT
ACCAGAAGTCAGCAGTTTCTAATTCTTTGTGGCGAAGAGGATGCCTTCCGACTTGGGATTGATCGAGCGGATGATACGAA
GCGGAATACCACTCTTGCTTTCAAGCTTTCGGAAACTCTTCCAGAAGTAGGAGATGGAAACAAACCATCAGTTTCTGAAG
GAACAGATAAGAGCCTAAGGGCTGTGCAGACCTTAAAAGAACATGAGGAAGACGCGGAAGACCAAAAAGATCCTGTCGCA
TTGCTAATGTCAGCCGACCCGATGATTGGGATGGAAAACCTTACCCCTTATGATTTCATGGAGAATGGCGGAAACTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)

AAA domain (AAA_30)

(346-541)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.543

98.303

0.595