Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LIN52_RS14750 Genome accession   NZ_CP085188
Coordinates   3033434..3034063 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC195     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3028434..3039063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN52_RS14735 (LIN52_14740) helD 3028676..3030730 (-) 2055 WP_000420536.1 DNA helicase IV -
  LIN52_RS14740 (LIN52_14745) yccF 3030853..3031299 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LIN52_RS14745 (LIN52_14750) yccS 3031309..3033471 (+) 2163 WP_000875023.1 YccS family putative transporter -
  LIN52_RS14750 (LIN52_14755) sxy/tfoX 3033434..3034063 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LIN52_RS14755 (LIN52_14760) sulA 3034282..3034791 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LIN52_RS14760 (LIN52_14765) ompA 3035148..3036200 (+) 1053 WP_001361736.1 porin OmpA -
  LIN52_RS14765 (LIN52_14770) matP 3036276..3036728 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LIN52_RS14770 (LIN52_14775) ycbZ 3036914..3038674 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=615782 LIN52_RS14750 WP_000839153.1 3033434..3034063(-) (sxy/tfoX) [Escherichia coli strain EC195]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=615782 LIN52_RS14750 WP_000839153.1 3033434..3034063(-) (sxy/tfoX) [Escherichia coli strain EC195]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1