Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EKM72_RS14910 Genome accession   NZ_AP019305
Coordinates   2793498..2794271 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain TUM9458     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2788498..2799271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKM72_RS14890 trmFO 2788841..2790148 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  EKM72_RS14895 xerC 2790566..2791462 (+) 897 WP_001015601.1 tyrosine recombinase XerC -
  EKM72_RS14900 hslV 2791459..2792004 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  EKM72_RS14905 hslU 2792070..2793473 (+) 1404 WP_000379044.1 ATP-dependent protease ATPase subunit HslU -
  EKM72_RS14910 codY 2793498..2794271 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EKM72_RS14915 - 2794345..2794419 (+) 75 WP_031761472.1 hypothetical protein -
  EKM72_RS14920 rpsB 2794618..2795385 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  EKM72_RS14925 - 2795419..2795532 (+) 114 WP_001789890.1 hypothetical protein -
  EKM72_RS14930 tsf 2795567..2796448 (+) 882 WP_000201392.1 translation elongation factor Ts -
  EKM72_RS14935 pyrH 2796585..2797307 (+) 723 WP_000057330.1 UMP kinase -
  EKM72_RS14940 frr 2797326..2797880 (+) 555 WP_001280006.1 ribosome recycling factor -
  EKM72_RS14945 - 2798253..2799023 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=61574 EKM72_RS14910 WP_000055337.1 2793498..2794271(+) (codY) [Staphylococcus aureus strain TUM9458]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=61574 EKM72_RS14910 WP_000055337.1 2793498..2794271(+) (codY) [Staphylococcus aureus strain TUM9458]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment