Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SCI_RS01510 | Genome accession | NC_022238 |
| Coordinates | 288383..288874 (+) | Length | 163 a.a. |
| NCBI ID | WP_003030533.1 | Uniprot ID | F9PAY8 |
| Organism | Streptococcus constellatus subsp. pharyngis C1050 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 283383..293874
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SCI_RS01475 (SCI_0291) | - | 283918..284757 (+) | 840 | WP_006269287.1 | Cof-type HAD-IIB family hydrolase | - |
| SCI_RS10120 (SCI_0292) | - | 284769..285375 (+) | 607 | Protein_278 | histidine phosphatase family protein | - |
| SCI_RS01490 (SCI_0293) | - | 285456..285884 (-) | 429 | WP_020997594.1 | hypothetical protein | - |
| SCI_RS01495 (SCI_0294) | - | 285859..286764 (-) | 906 | WP_006269291.1 | phosphodiester glycosidase family protein | - |
| SCI_RS01500 (SCI_0295) | - | 286761..287804 (-) | 1044 | WP_020997595.1 | bifunctional glycosyltransferase family 2/GtrA family protein | - |
| SCI_RS01505 (SCI_0296) | rpsF | 288081..288371 (+) | 291 | WP_003026325.1 | 30S ribosomal protein S6 | - |
| SCI_RS01510 (SCI_0297) | ssb | 288383..288874 (+) | 492 | WP_003030533.1 | single-stranded DNA-binding protein | Machinery gene |
| SCI_RS01515 (SCI_0298) | rpsR | 288911..289150 (+) | 240 | WP_000068664.1 | 30S ribosomal protein S18 | - |
| SCI_RS01520 (SCI_0299) | - | 289324..290001 (-) | 678 | WP_003070862.1 | DUF1129 domain-containing protein | - |
| SCI_RS01525 (SCI_0300) | - | 290017..290961 (-) | 945 | WP_003070861.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18157.86 Da Isoelectric Point: 4.9008
>NTDB_id=61574 SCI_RS01510 WP_003030533.1 288383..288874(+) (ssb) [Streptococcus constellatus subsp. pharyngis C1050]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGGYASNNFGNSSSNFGNATSANQVPNFSRDENPFGNTNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGGYASNNFGNSSSNFGNATSANQVPNFSRDENPFGNTNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=61574 SCI_RS01510 WP_003030533.1 288383..288874(+) (ssb) [Streptococcus constellatus subsp. pharyngis C1050]
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAACTTCGCTATACGCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTTAATCGCAATTTTAAAAATCAAAGTGGCGAGAGAGAAGCAGACTTTATTAATGTTGTAATTT
GGCGCCAGCAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCTCTTATCGGAATTACTGGTCGTATTCAGACGCGT
AACTACGAAAATCAGCAAGGTCAACGTGTCTATGTGACAGAAGTCGTAGCAGATAATTTCCAACTATTGGAAAGCCGTGC
TAGTCGTGAAGGTCAATCTTCTGGTGGCTATGCTTCCAACAACTTCGGAAATTCATCTTCCAATTTTGGTAACGCAACTT
CTGCCAACCAAGTACCTAACTTTTCTCGTGATGAAAATCCATTTGGGAATACCAATCCAATGGACATCTCAGATGACGAT
CTACCATTTTAA
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAACTTCGCTATACGCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTTAATCGCAATTTTAAAAATCAAAGTGGCGAGAGAGAAGCAGACTTTATTAATGTTGTAATTT
GGCGCCAGCAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCTCTTATCGGAATTACTGGTCGTATTCAGACGCGT
AACTACGAAAATCAGCAAGGTCAACGTGTCTATGTGACAGAAGTCGTAGCAGATAATTTCCAACTATTGGAAAGCCGTGC
TAGTCGTGAAGGTCAATCTTCTGGTGGCTATGCTTCCAACAACTTCGGAAATTCATCTTCCAATTTTGGTAACGCAACTT
CTGCCAACCAAGTACCTAACTTTTCTCGTGATGAAAATCCATTTGGGAATACCAATCCAATGGACATCTCAGATGACGAT
CTACCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.523 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.558 |
100 |
0.607 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.046 |
66.871 |
0.368 |