Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NQZ88_RS04880 Genome accession   NZ_CP102152
Coordinates   958583..960319 (+) Length   578 a.a.
NCBI ID   WP_074389411.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS11     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 953583..965319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ88_RS04855 (NQZ88_04855) - 956140..956895 (+) 756 WP_012775077.1 class I SAM-dependent methyltransferase -
  NQZ88_RS04860 (NQZ88_04860) pcp 956892..957539 (+) 648 WP_002940685.1 pyroglutamyl-peptidase I -
  NQZ88_RS04865 (NQZ88_04865) - 957539..957847 (+) 309 WP_014635963.1 DUF4298 domain-containing protein -
  NQZ88_RS04870 (NQZ88_04870) rpsP 957971..958243 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  NQZ88_RS04875 (NQZ88_04875) - 958265..958507 (+) 243 WP_012028079.1 KH domain-containing protein -
  NQZ88_RS04880 (NQZ88_04880) rcrP 958583..960319 (+) 1737 WP_074389411.1 ABC transporter ATP-binding protein Regulator
  NQZ88_RS04885 (NQZ88_04885) rcrQ 960328..962097 (+) 1770 WP_074389412.1 ABC transporter ATP-binding protein Regulator
  NQZ88_RS04890 (NQZ88_04890) - 962154..963077 (-) 924 WP_024383788.1 polysaccharide deacetylase family protein -
  NQZ88_RS04895 (NQZ88_04895) - 963182..964468 (+) 1287 WP_011922330.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65170.49 Da        Isoelectric Point: 5.1965

>NTDB_id=615671 NQZ88_RS04880 WP_074389411.1 958583..960319(+) (rcrP) [Streptococcus suis strain DNS11]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIVSVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALDPLKTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=615671 NQZ88_RS04880 WP_074389411.1 958583..960319(+) (rcrP) [Streptococcus suis strain DNS11]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTCTTATTTGTAGT
GGTAAACTTAGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTGATTGTCCTGCTCGGGATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAGTTA
ACTACAAATATCGTCAAGGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTCTTAAAACTAG
GTATTATTACCCCCTTGATGATGATTGTTTCTGTCATCATGACCTTGGTAACCAGTCCGAGCTTAGCCTGGACAGTAGCA
GTAGCCATGCCGTTTCTAGTTTTTGTTATTTTCTATGTGGCAACAAAAACTCGTCCTCTCTCTGAAAAACAACAAAAACG
TTTGGATACGATCAACCAATATGTTCGTGAAAATCTCATGGGCTTACGTGTCATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCTCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTTGCTTTGGATCCCTTGAAAACAGGCAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCTTTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GACGGCATAACTGAAACAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTACCCTGGTGAAACGGAATC
GCCTGTGCTGCACAATATTTCCTTCAAAGCTAAGCCTGGTGAAACGATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCGCGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCAGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCAGAAGGTGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTCAAACAGCCGGATATTTACATTTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
GATTTTGAGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCCCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGCCGCGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTATCGAGAAATCGCCAATTCTCAGCTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.538

100

0.401