Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   NQZ90_RS02400 Genome accession   NZ_CP102148
Coordinates   481059..481793 (+) Length   244 a.a.
NCBI ID   WP_002943067.1    Uniprot ID   A0A0H3MU26
Organism   Streptococcus suis strain DNC15     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 476059..486793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS02375 (NQZ90_02375) - 476560..476868 (-) 309 WP_002938710.1 DUF1827 family protein -
  NQZ90_RS02380 (NQZ90_02380) - 476923..477384 (-) 462 WP_024388225.1 NUDIX hydrolase -
  NQZ90_RS02385 (NQZ90_02385) clpE 477570..479798 (-) 2229 WP_015646546.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  NQZ90_RS02390 (NQZ90_02390) - 480021..480251 (+) 231 WP_002938704.1 DUF1797 family protein -
  NQZ90_RS02395 (NQZ90_02395) - 480377..481066 (+) 690 WP_002938702.1 amino acid ABC transporter permease -
  NQZ90_RS02400 (NQZ90_02400) amiE 481059..481793 (+) 735 WP_002943067.1 amino acid ABC transporter ATP-binding protein Regulator
  NQZ90_RS02405 (NQZ90_02405) - 481923..482771 (+) 849 WP_015646548.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  NQZ90_RS02410 (NQZ90_02410) - 484205..484504 (+) 300 WP_015646549.1 hypothetical protein -
  NQZ90_RS02415 (NQZ90_02415) lepB 484494..485096 (+) 603 WP_032504114.1 signal peptidase I -
  NQZ90_RS02420 (NQZ90_02420) - 485189..485500 (+) 312 WP_225533365.1 hypothetical protein -
  NQZ90_RS02425 (NQZ90_02425) - 485501..485890 (-) 390 Protein_427 transposase -
  NQZ90_RS02430 (NQZ90_02430) - 485858..486649 (+) 792 WP_044685946.1 class C sortase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26881.11 Da        Isoelectric Point: 4.7252

>NTDB_id=615563 NQZ90_RS02400 WP_002943067.1 481059..481793(+) (amiE) [Streptococcus suis strain DNC15]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=615563 NQZ90_RS02400 WP_002943067.1 481059..481793(+) (amiE) [Streptococcus suis strain DNC15]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAGGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTAGTCGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTACCGACCAAGGGAACTGTTACATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCGAATATGACGGTATTAGATAATATTACTTTATCACCTAT
TAAGACAAAGGGAATTGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CGAATGCCTATCCACAAAGTCTTTCAGGTGGTCAGCAACAGCGGATTGCTATTGCACGTGGTCTGGCCATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGACCCTGAAATGGTTGGTGAAGTTCTTGCTGTTATGCAGGATTTGGC
TAAGTCAGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGTGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACTAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MU26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365