Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NQZ90_RS01705 Genome accession   NZ_CP102148
Coordinates   344320..345108 (+) Length   262 a.a.
NCBI ID   WP_011921926.1    Uniprot ID   A0A0H3MTH0
Organism   Streptococcus suis strain DNC15     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 339320..350108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS01685 (NQZ90_01685) - 339673..340632 (-) 960 WP_014637479.1 asparaginase -
  NQZ90_RS01690 (NQZ90_01690) - 340702..342067 (+) 1366 Protein_294 Cof-type HAD-IIB family hydrolase -
  NQZ90_RS01695 (NQZ90_01695) - 342083..342535 (-) 453 WP_238718848.1 universal stress protein -
  NQZ90_RS01700 (NQZ90_01700) - 342690..343904 (+) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -
  NQZ90_RS01705 (NQZ90_01705) codY 344320..345108 (+) 789 WP_011921926.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NQZ90_RS01710 (NQZ90_01710) - 345121..345651 (+) 531 WP_029694120.1 cysteine hydrolase family protein -
  NQZ90_RS01715 (NQZ90_01715) rplS 345917..346264 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  NQZ90_RS01720 (NQZ90_01720) - 346449..347123 (+) 675 WP_012774968.1 hydrolase -
  NQZ90_RS01725 (NQZ90_01725) gatC 347340..347642 (+) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  NQZ90_RS01730 (NQZ90_01730) gatA 347642..349108 (+) 1467 WP_024389557.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29307.34 Da        Isoelectric Point: 4.6190

>NTDB_id=615554 NQZ90_RS01705 WP_011921926.1 344320..345108(+) (codY) [Streptococcus suis strain DNC15]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=615554 NQZ90_RS01705 WP_011921926.1 344320..345108(+) (codY) [Streptococcus suis strain DNC15]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGACTGCAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTATGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAATAAACAATTTCCAGAAGGATATGTA
AAAGCAGTCGCGCAGGTTTATGATACGCAGGTTAACTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTTGAATCACG
ATCGACCTATCCAAATGGTCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MTH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.439

93.893

0.492