Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   LIN97_RS10150 Genome accession   NZ_CP085095
Coordinates   2040995..2041237 (-) Length   80 a.a.
NCBI ID   WP_233115293.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 5R     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2035995..2046237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN97_RS10135 - 2036675..2037112 (+) 438 WP_005572487.1 DNA polymerase III subunit psi -
  LIN97_RS10140 rimI 2037122..2037565 (+) 444 WP_005590261.1 ribosomal protein S18-alanine N-acetyltransferase -
  LIN97_RS10145 recC 2037567..2040983 (-) 3417 WP_014167945.1 exodeoxyribonuclease V subunit gamma -
  LIN97_RS10150 comQ 2040995..2041237 (-) 243 WP_233115293.1 DUF5374 domain-containing protein Machinery gene
  LIN97_RS10865 - 2041505..2041666 (-) 162 Protein_1965 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LIN97_RS10170 pal 2042276..2042743 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  LIN97_RS10175 tolB 2042758..2044038 (-) 1281 WP_005545588.1 Tol-Pal system beta propeller repeat protein TolB -
  LIN97_RS10180 tolA 2044073..2045281 (-) 1209 WP_005545586.1 cell envelope integrity protein TolA -
  LIN97_RS10185 tolR 2045298..2045720 (-) 423 WP_005545585.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 80 a.a.        Molecular weight: 9544.90 Da        Isoelectric Point: 9.9572

>NTDB_id=615512 LIN97_RS10150 WP_233115293.1 2040995..2041237(-) (comQ) [Aggregatibacter actinomycetemcomitans strain 5R]
MLVSKRYYPLEFNQWGNVQRKSAVEIYQRFQAIQIAENQHQRRFLGLPCESQVQQNQIRFQVICSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 243 bp        

>NTDB_id=615512 LIN97_RS10150 WP_233115293.1 2040995..2041237(-) (comQ) [Aggregatibacter actinomycetemcomitans strain 5R]
GTGTTGGTGAGCAAGCGTTATTATCCTTTGGAGTTTAACCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTA
TCAGCGTTTTCAAGCCATCCAAATTGCCGAAAATCAGCATCAACGCCGTTTTCTCGGGTTGCCTTGTGAATCACAGGTGC
AGCAAAATCAAATTCGTTTTCAGGTGATTTGTTCGCAAAATCAGGTGTCGGTAAAATATCCTCGCGGTGAAATTAGTTTA
TAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.522

86.25

0.488