Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   NQZ91_RS08375 Genome accession   NZ_CP102145
Coordinates   1666393..1668876 (-) Length   827 a.a.
NCBI ID   WP_257117323.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1661393..1673876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS08355 (NQZ91_08355) dinB 1661831..1662895 (+) 1065 WP_257117320.1 DNA polymerase IV -
  NQZ91_RS08360 (NQZ91_08360) - 1663000..1663923 (+) 924 WP_105160113.1 1-phosphofructokinase family hexose kinase -
  NQZ91_RS08365 (NQZ91_08365) - 1664433..1665491 (+) 1059 WP_306455678.1 serine hydrolase -
  NQZ91_RS08370 (NQZ91_08370) - 1665558..1666295 (-) 738 WP_257117322.1 hypothetical protein -
  NQZ91_RS08375 (NQZ91_08375) recD/recD2/recDB 1666393..1668876 (-) 2484 WP_257117323.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NQZ91_RS08380 (NQZ91_08380) lepB 1668928..1669548 (-) 621 WP_105111737.1 signal peptidase I -
  NQZ91_RS08385 (NQZ91_08385) rnhC 1669560..1670447 (-) 888 WP_257117324.1 ribonuclease HIII -
  NQZ91_RS08390 (NQZ91_08390) - 1670569..1671552 (+) 984 WP_257117325.1 Gfo/Idh/MocA family protein -
  NQZ91_RS08395 (NQZ91_08395) - 1671785..1672903 (+) 1119 WP_257117326.1 LysM domain-containing protein -

Sequence

Protein


Download         Length: 827 a.a.        Molecular weight: 92626.16 Da        Isoelectric Point: 4.6550

>NTDB_id=615503 NQZ91_RS08375 WP_257117323.1 1666393..1668876(-) (recD/recD2/recDB) [Streptococcus suis strain DNS20]
MQEVSFTGTIDRIIFENPSNFYKILLLEIEETNADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTASGLVKYFSSDHFKGIGRKTAEKIVQLYGEDTIDKILAEPEKLTQITGLSNKNQQAFVEKLRLNYGTEMILSKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGMGFTIADKIAENLGIESDSPQRFRAGMLYCLLQRSMETGDTYVEA
RDLLEASIDVLEKSRHVELDPAAVAQELTGLINDGKVQQAGTKIFDNSLYFAEEGIHKNLSRLMGKNGFKPFPRKDVETA
IAELESMSSLTYDAIQKEAIVRAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTKSRDECPVLLAAPTGRAARRM
NELTGLPAATIHRHLGLVEGQEESYRDDYLDAEFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIKKLPSLTLEKIYRQSDDSTIVTLASQIRQGSLPADFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPSQEVQ
ILAPMYRGVAGIDQLNIMTQNLLNPISEGQLEFAHNDQIFRQGDRVIHLVNDAESNVFNGDLGYITDLLPAKYTDSKQDE
ISINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTLRKTYLVPRFQGDLEEKAERPEQISPNLPTKSDQSISSEQPAPTKVPEEKTVSAPSQLSLLDQEPVENTPIQPTS
YILTEKNILTIDPMIGLTDEDIALFFK

Nucleotide


Download         Length: 2484 bp        

>NTDB_id=615503 NQZ91_RS08375 WP_257117323.1 1666393..1668876(-) (recD/recD2/recDB) [Streptococcus suis strain DNS20]
ATGCAAGAAGTATCTTTCACCGGAACTATCGACCGGATTATTTTTGAAAATCCCAGCAATTTTTATAAAATCCTGCTCTT
GGAAATCGAGGAGACCAATGCGGATTATGACGACTACGAAATTATCGTGACCGGCACCATCGCAGACGTTATTGAAGGCG
AAGATTACCGCTTTTACGGCAACTTGGTTACCCATCCCAAATACGGTCAGCAGCTGCAAATCTCCCGCTACGAACGCAGC
AAACCAACTGCCTCTGGACTGGTCAAGTATTTTTCCAGCGACCATTTCAAGGGTATCGGCCGCAAGACGGCTGAGAAAAT
AGTCCAGCTCTACGGCGAGGATACCATTGATAAAATCCTAGCCGAACCTGAAAAATTGACCCAGATTACAGGATTGTCCA
ACAAAAATCAGCAGGCTTTTGTGGAAAAACTCCGCCTCAACTACGGTACAGAGATGATTTTGTCCAAACTAGCCGAATAC
GGCATTCCCAACAAACTCGCCTTTCAAATCCAAGACCAGTACAAGGAGAAAACCCTGCAAATCATCGAGGAAAATCCCTA
CCAGCTGGTCGAAGATGTTCAAGGAATGGGCTTTACCATTGCCGATAAAATCGCTGAAAATCTGGGCATCGAGAGCGACT
CCCCTCAGCGTTTCCGAGCCGGCATGCTCTATTGCCTGCTCCAGCGCTCTATGGAGACGGGCGACACTTATGTCGAGGCG
CGTGATTTGCTAGAGGCCAGCATTGACGTGCTGGAAAAATCCCGCCATGTCGAGTTGGACCCGGCTGCCGTAGCGCAGGA
ATTGACCGGTCTCATTAATGACGGCAAGGTCCAGCAAGCAGGCACCAAAATTTTTGACAACAGTCTCTACTTTGCTGAGG
AAGGTATTCACAAGAACCTCAGCCGCCTCATGGGCAAAAATGGTTTCAAGCCCTTCCCACGCAAGGACGTCGAGACTGCC
ATTGCAGAGCTGGAAAGCATGTCATCACTGACCTACGATGCTATTCAGAAAGAGGCTATTGTCCGAGCTATTACCAATCC
GCTCTTTATCCTAACTGGCGGACCCGGCACAGGCAAGACCACAGTCATCAACGGTATCATCGCGGTCTACGCTATCTTGC
ACAAGATTGATTTGACGAAAAGCCGTGACGAATGTCCTGTCCTCTTAGCTGCTCCAACCGGCCGAGCCGCCCGTCGGATG
AATGAATTGACCGGCCTGCCAGCTGCGACCATCCACCGCCATCTGGGCTTGGTTGAAGGTCAAGAAGAATCCTACCGCGA
TGATTATCTGGATGCGGAATTTATCATCGTCGATGAATTTTCTATGGTCGATACTTGGTTGGCCAACCAGCTCTTCCAGA
ATATTTCCTCTCAGACGCAGGTCCTCATTGTCGGAGATGCGGAGCAATTGCCATCGGTCAGCCCCGGTCAGGTCCTGGCC
GACCTGCTCAAGATTAAAAAATTACCCAGCCTAACGCTGGAGAAAATCTACCGCCAGTCCGACGACTCGACCATTGTCAC
TCTTGCCAGTCAAATTCGGCAAGGCAGCCTTCCAGCTGATTTCCGTGAAAAAAAGGCAGACCGGTCTTATTTCGAGGCGC
AAAACGAACAAATCCCTGCCCTGATTGAACGCATTGTCGGTGCCGCCATCAAGTCGGGAATCCCAAGTCAGGAAGTGCAA
ATCTTGGCACCCATGTACCGAGGAGTAGCAGGCATTGACCAGCTCAACATTATGACCCAAAACCTGCTCAATCCAATAAG
CGAGGGGCAATTGGAATTTGCTCATAACGACCAGATTTTCCGCCAGGGCGACCGGGTCATCCACTTGGTCAACGACGCTG
AAAGCAATGTCTTTAATGGCGACTTGGGCTACATCACCGACCTCCTGCCTGCCAAGTACACCGACAGCAAGCAGGACGAG
ATTTCCATCAACTTTGACGGTAGCGAAGTGACCTACCCCCGCAATGAGTGGTACAAAATCACTCTGGCCTATGCCATGTC
CATCCACAAATCTCAGGGGAGCGAGTTTCAGGTGGTCATTCTGCCCATCACCCGTACCAGCCACCGGATGCTCCAGCGCA
ATCTGGTCTACACGGCCATCACCCGCTCTAAGAGCAAGCTCATCCTGCTGGGAGAAATCTCCGCCTTTGACTACGCGGTC
AAGAATGCCGGTACCCTGCGCAAAACCTATCTGGTTCCCCGTTTCCAAGGGGATCTTGAAGAAAAGGCAGAGCGGCCAGA
GCAGATTTCACCAAATCTGCCTACAAAATCTGACCAGTCTATCTCGTCTGAACAGCCCGCACCAACCAAAGTGCCTGAGG
AAAAAACTGTATCTGCACCCAGCCAACTTTCCCTACTGGACCAAGAACCTGTGGAAAACACCCCCATCCAGCCCACTAGC
TACATTCTGACCGAAAAGAATATCCTCACCATCGACCCCATGATTGGCCTGACCGATGAAGATATTGCTCTATTTTTCAA
ATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

AAA domain (AAA_30)

(332-528)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.146

94.921

0.391