Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   LIN95_RS10145 Genome accession   NZ_CP085094
Coordinates   2041005..2041247 (-) Length   80 a.a.
NCBI ID   WP_233115293.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 5S     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2036005..2046247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN95_RS10130 - 2036685..2037122 (+) 438 WP_005572487.1 DNA polymerase III subunit psi -
  LIN95_RS10135 rimI 2037132..2037575 (+) 444 WP_005590261.1 ribosomal protein S18-alanine N-acetyltransferase -
  LIN95_RS10140 recC 2037577..2040993 (-) 3417 WP_014167945.1 exodeoxyribonuclease V subunit gamma -
  LIN95_RS10145 comQ 2041005..2041247 (-) 243 WP_233115293.1 DUF5374 domain-containing protein Machinery gene
  LIN95_RS10860 - 2041515..2041676 (-) 162 Protein_1964 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LIN95_RS10165 pal 2042286..2042753 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  LIN95_RS10170 tolB 2042768..2044048 (-) 1281 WP_005545588.1 Tol-Pal system beta propeller repeat protein TolB -
  LIN95_RS10175 tolA 2044083..2045291 (-) 1209 WP_005545586.1 cell envelope integrity protein TolA -
  LIN95_RS10180 tolR 2045308..2045730 (-) 423 WP_005545585.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 80 a.a.        Molecular weight: 9544.90 Da        Isoelectric Point: 9.9572

>NTDB_id=615487 LIN95_RS10145 WP_233115293.1 2041005..2041247(-) (comQ) [Aggregatibacter actinomycetemcomitans strain 5S]
MLVSKRYYPLEFNQWGNVQRKSAVEIYQRFQAIQIAENQHQRRFLGLPCESQVQQNQIRFQVICSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 243 bp        

>NTDB_id=615487 LIN95_RS10145 WP_233115293.1 2041005..2041247(-) (comQ) [Aggregatibacter actinomycetemcomitans strain 5S]
GTGTTGGTGAGCAAGCGTTATTATCCTTTGGAGTTTAACCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTA
TCAGCGTTTTCAAGCCATCCAAATTGCCGAAAATCAGCATCAACGCCGTTTTCTCGGGTTGCCTTGTGAATCACAGGTGC
AGCAAAATCAAATTCGTTTTCAGGTGATTTGTTCGCAAAATCAGGTGTCGGTAAAATATCCTCGCGGTGAAATTAGTTTA
TAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.522

86.25

0.488