Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   LIN99_RS10270 Genome accession   NZ_CP085093
Coordinates   2055972..2056214 (-) Length   80 a.a.
NCBI ID   WP_233115293.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 23S     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2050972..2061214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN99_RS10255 - 2051652..2052089 (+) 438 WP_005572487.1 DNA polymerase III subunit psi -
  LIN99_RS10260 rimI 2052099..2052542 (+) 444 WP_005590261.1 ribosomal protein S18-alanine N-acetyltransferase -
  LIN99_RS10265 recC 2052544..2055960 (-) 3417 WP_014167945.1 exodeoxyribonuclease V subunit gamma -
  LIN99_RS10270 comQ 2055972..2056214 (-) 243 WP_233115293.1 DUF5374 domain-containing protein Machinery gene
  LIN99_RS10980 - 2056482..2056643 (-) 162 Protein_1987 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LIN99_RS10290 pal 2057253..2057720 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  LIN99_RS10295 tolB 2057735..2059015 (-) 1281 WP_005545588.1 Tol-Pal system beta propeller repeat protein TolB -
  LIN99_RS10300 tolA 2059050..2060258 (-) 1209 WP_005545586.1 cell envelope integrity protein TolA -
  LIN99_RS10305 tolR 2060275..2060697 (-) 423 WP_005545585.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 80 a.a.        Molecular weight: 9544.90 Da        Isoelectric Point: 9.9572

>NTDB_id=615462 LIN99_RS10270 WP_233115293.1 2055972..2056214(-) (comQ) [Aggregatibacter actinomycetemcomitans strain 23S]
MLVSKRYYPLEFNQWGNVQRKSAVEIYQRFQAIQIAENQHQRRFLGLPCESQVQQNQIRFQVICSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 243 bp        

>NTDB_id=615462 LIN99_RS10270 WP_233115293.1 2055972..2056214(-) (comQ) [Aggregatibacter actinomycetemcomitans strain 23S]
GTGTTGGTGAGCAAGCGTTATTATCCTTTGGAGTTTAACCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTA
TCAGCGTTTTCAAGCCATCCAAATTGCCGAAAATCAGCATCAACGCCGTTTTCTCGGGTTGCCTTGTGAATCACAGGTGC
AGCAAAATCAAATTCGTTTTCAGGTGATTTGTTCGCAAAATCAGGTGTCGGTAAAATATCCTCGCGGTGAAATTAGTTTA
TAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.522

86.25

0.488