Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NQZ93_RS01785 Genome accession   NZ_CP102141
Coordinates   352093..352881 (+) Length   262 a.a.
NCBI ID   WP_013730143.1    Uniprot ID   -
Organism   Streptococcus suis strain DNR48     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 347093..357881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ93_RS01765 (NQZ93_01765) - 347399..348358 (-) 960 WP_024381504.1 asparaginase -
  NQZ93_RS01770 (NQZ93_01770) - 348428..349793 (+) 1366 Protein_309 Cof-type HAD-IIB family hydrolase -
  NQZ93_RS01775 (NQZ93_01775) - 349809..350261 (-) 453 WP_004195772.1 universal stress protein -
  NQZ93_RS01780 (NQZ93_01780) - 350416..351630 (+) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -
  NQZ93_RS01785 (NQZ93_01785) codY 352093..352881 (+) 789 WP_013730143.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NQZ93_RS01790 (NQZ93_01790) - 352883..353434 (+) 552 WP_024376330.1 cysteine hydrolase family protein -
  NQZ93_RS01795 (NQZ93_01795) rplS 353852..354199 (+) 348 WP_257115323.1 50S ribosomal protein L19 -
  NQZ93_RS01800 (NQZ93_01800) - 354386..355060 (+) 675 WP_013730145.1 hydrolase -
  NQZ93_RS01805 (NQZ93_01805) gatC 355278..355580 (+) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  NQZ93_RS01810 (NQZ93_01810) gatA 355580..357046 (+) 1467 WP_024381502.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29263.33 Da        Isoelectric Point: 4.6797

>NTDB_id=615260 NQZ93_RS01785 WP_013730143.1 352093..352881(+) (codY) [Streptococcus suis strain DNR48]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELAGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=615260 NQZ93_RS01785 WP_013730143.1 352093..352881(+) (codY) [Streptococcus suis strain DNR48]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCTATTGCTGAACATCTATCAGCTATTATTGATTGCAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTATGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAATAAACAATTTCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTATGATACGCAGGTTAACTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTTGAATCACG
ATCGACCTATCCAAATGGTCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGCGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAAGCAGTTGCAGCTATTTTGGGTGAATTGGCTGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

58.779

100

0.588
  codY Bacillus subtilis subsp. subtilis str. 168

52.033

93.893

0.489