Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   LIO34_RS06440 Genome accession   NZ_CP085085
Coordinates   1271316..1272155 (-) Length   279 a.a.
NCBI ID   WP_002936004.1    Uniprot ID   A0A126UN93
Organism   Streptococcus suis strain Ssuis_MA8     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1266316..1277155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO34_RS06425 uidA 1266679..1268477 (-) 1799 Protein_1219 beta-glucuronidase -
  LIO34_RS06430 - 1268493..1269545 (-) 1053 WP_172005859.1 sugar kinase -
  LIO34_RS06435 - 1269576..1271129 (-) 1554 WP_013730405.1 MFS transporter -
  LIO34_RS06440 endA 1271316..1272155 (-) 840 WP_002936004.1 DNA/RNA non-specific endonuclease Machinery gene
  LIO34_RS06445 - 1272185..1272376 (-) 192 WP_002936005.1 DNA-directed RNA polymerase subunit beta -
  LIO34_RS06450 murA 1272369..1273658 (-) 1290 WP_024415642.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LIO34_RS06455 - 1273683..1273907 (-) 225 WP_024387485.1 DUF1146 family protein -
  LIO34_RS06460 - 1273967..1274383 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  LIO34_RS06465 atpD 1274393..1275799 (-) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  LIO34_RS06470 - 1275819..1276697 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30175.36 Da        Isoelectric Point: 6.2370

>NTDB_id=615172 LIO34_RS06440 WP_002936004.1 1271316..1272155(-) (endA) [Streptococcus suis strain Ssuis_MA8]
MAKKNVRKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRIRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=615172 LIO34_RS06440 WP_002936004.1 1271316..1272155(-) (endA) [Streptococcus suis strain Ssuis_MA8]
ATGGCGAAGAAAAATGTAAGAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTCGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGTAATCAAACAGATTTAGATGCATCGGTTGCCAGTGTACCTTATGGTGATAATAAGACAAA
GACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTATCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A126UN93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.915

84.588

0.591
  endA Streptococcus pneumoniae D39

69.915

84.588

0.591
  endA Streptococcus pneumoniae R6

69.915

84.588

0.591
  endA Streptococcus pneumoniae TIGR4

69.915

84.588

0.591