Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SII_RS02420 Genome accession   NC_022237
Coordinates   477276..478121 (+) Length   281 a.a.
NCBI ID   WP_020998427.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 472276..483121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS02395 (SII_0473) - 472645..473523 (+) 879 WP_020998424.1 F0F1 ATP synthase subunit gamma -
  SII_RS02400 (SII_0474) atpD 473558..474964 (+) 1407 WP_003076325.1 F0F1 ATP synthase subunit beta -
  SII_RS02405 (SII_0475) - 474975..475394 (+) 420 WP_003072157.1 F0F1 ATP synthase subunit epsilon -
  SII_RS09620 (SII_0476) - 475496..475726 (+) 231 WP_014829739.1 DUF1146 family protein -
  SII_RS02410 (SII_0477) murA 475764..477044 (+) 1281 WP_020998426.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SII_RS02415 - 477037..477213 (+) 177 WP_003072163.1 DNA-directed RNA polymerase subunit beta -
  SII_RS02420 (SII_0478) endA 477276..478121 (+) 846 WP_020998427.1 DNA/RNA non-specific endonuclease Machinery gene
  SII_RS02425 (SII_0479) - 478424..480160 (+) 1737 WP_020998428.1 ABC transporter ATP-binding protein -
  SII_RS02430 (SII_0480) - 480170..481939 (+) 1770 WP_020998429.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 30680.31 Da        Isoelectric Point: 10.3160

>NTDB_id=61516 SII_RS02420 WP_020998427.1 477276..478121(+) (endA) [Streptococcus intermedius C270]
MAQRKSNQKVIQSVIGGIIALSLALGAYYFRANNNGTVHQDSSAINKSLEQHHAGPSKDLAQSVLTGNVRSQFKGKIEWN
GAGAFIVNENKNDLDAKVGSIPYADNKTKLVRGRTVPTVANALLSKATRQYRNREETGNGSTTWTPAGWHQVKHLSGEYH
HAVDRGHLLGYALIGNLKGFDASTSNPKNIAVQTAWANQANASHSTGQNFYETKVRKALDKNKRVRYRVTLIYASEQDLV
PVGSHIEAKSSDGSLEINVFVPNVQTGIRLNYQTGEVTVTN

Nucleotide


Download         Length: 846 bp        

>NTDB_id=61516 SII_RS02420 WP_020998427.1 477276..478121(+) (endA) [Streptococcus intermedius C270]
ATGGCGCAGAGAAAATCCAATCAAAAAGTAATACAGAGTGTTATTGGAGGGATTATTGCACTTAGTTTAGCTCTTGGTGC
TTATTATTTTCGAGCAAATAATAATGGTACAGTTCATCAAGATAGTTCTGCCATTAACAAAAGTCTCGAGCAACATCATG
CGGGTCCTAGTAAAGATCTGGCTCAGAGTGTATTGACAGGTAATGTGCGTTCACAATTTAAAGGGAAAATCGAGTGGAAT
GGCGCAGGAGCTTTTATTGTCAATGAGAATAAAAATGATTTAGATGCTAAAGTGGGAAGTATTCCTTATGCGGATAATAA
GACAAAATTGGTCAGAGGTCGAACTGTTCCGACGGTAGCAAATGCTCTTTTGTCCAAAGCTACTCGTCAGTATAGGAATC
GTGAAGAAACAGGTAATGGTTCAACAACTTGGACACCTGCTGGCTGGCATCAAGTGAAGCATTTATCGGGTGAATATCAT
CATGCAGTTGACCGTGGACATCTGCTAGGCTATGCCTTGATTGGTAACTTGAAAGGCTTTGATGCTTCGACTAGTAATCC
CAAAAATATTGCGGTGCAAACGGCTTGGGCGAATCAAGCAAATGCTAGCCATTCTACAGGTCAAAATTTTTATGAAACGA
AAGTACGTAAAGCTCTTGATAAAAATAAACGAGTTCGGTATCGAGTGACCTTGATTTACGCAAGTGAGCAGGATTTAGTA
CCAGTTGGTTCACATATTGAAGCCAAGTCTAGCGACGGTAGTTTGGAAATAAATGTCTTTGTGCCAAACGTACAGACAGG
AATTCGATTAAATTATCAGACAGGAGAAGTGACGGTCACCAACTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(112-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

68.613

97.509

0.669
  endA Streptococcus pneumoniae D39

68.613

97.509

0.669
  endA Streptococcus pneumoniae R6

68.613

97.509

0.669
  endA Streptococcus pneumoniae TIGR4

68.613

97.509

0.669

Multiple sequence alignment