Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LF296_RS03345 Genome accession   NZ_CP085083
Coordinates   697668..698096 (+) Length   142 a.a.
NCBI ID   WP_272655505.1    Uniprot ID   A0AAJ6NJZ6
Organism   Acinetobacter vivianii strain KJ-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 692668..703096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF296_RS03325 (LF296_03325) - 692932..695235 (+) 2304 WP_004774676.1 RelA/SpoT family protein -
  LF296_RS03330 (LF296_03330) - 695334..695816 (-) 483 WP_338070684.1 hypothetical protein -
  LF296_RS03335 (LF296_03335) - 696016..696792 (-) 777 WP_272655503.1 SDR family oxidoreductase -
  LF296_RS03340 (LF296_03340) mazG 696893..697699 (+) 807 WP_272655504.1 nucleoside triphosphate pyrophosphohydrolase -
  LF296_RS03345 (LF296_03345) comEA 697668..698096 (+) 429 WP_272655505.1 ComEA family DNA-binding protein Machinery gene
  LF296_RS03350 (LF296_03350) pcnB 698237..699691 (+) 1455 WP_005255102.1 polynucleotide adenylyltransferase PcnB -
  LF296_RS03355 (LF296_03355) folK 699688..700176 (+) 489 WP_272655506.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LF296_RS03360 (LF296_03360) panB 700216..701025 (+) 810 WP_004774685.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LF296_RS03365 (LF296_03365) panC 701029..701874 (+) 846 WP_069578750.1 pantoate--beta-alanine ligase -
  LF296_RS03370 (LF296_03370) rapZ 701895..702746 (+) 852 WP_004774690.1 RNase adapter RapZ -
  LF296_RS03375 (LF296_03375) - 702743..703012 (+) 270 WP_004774692.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16270.68 Da        Isoelectric Point: 10.4275

>NTDB_id=615110 LF296_RS03345 WP_272655505.1 697668..698096(+) (comEA) [Acinetobacter vivianii strain KJ-1]
MIFRQASSKYRLFLLMILCVGCISHLNAQQFDQSYQQWKAQQQARDQQLANQANNNYYLSRPASQQNIKQISSSLNIQGD
KISLNQANLQQLQTLNGVGEKKAQTIMEYRQKNGGFKSVDELMNIKGIGPKLFEKNKARLML

Nucleotide


Download         Length: 429 bp        

>NTDB_id=615110 LF296_RS03345 WP_272655505.1 697668..698096(+) (comEA) [Acinetobacter vivianii strain KJ-1]
ATGATTTTTCGACAAGCGAGCAGCAAATATAGACTTTTTTTATTGATGATCTTGTGCGTGGGATGTATTTCACATCTCAA
CGCCCAACAGTTTGATCAGTCCTATCAACAATGGAAAGCTCAGCAGCAAGCACGTGACCAGCAATTGGCGAATCAGGCAA
ACAATAATTATTATTTATCCCGACCCGCTTCCCAACAAAATATAAAACAGATTTCATCTTCCCTAAATATTCAAGGCGAT
AAAATCAGTTTAAATCAGGCAAATTTACAGCAATTGCAGACGCTGAATGGTGTTGGCGAGAAAAAAGCCCAGACGATTAT
GGAATATCGTCAAAAGAATGGTGGCTTTAAAAGTGTAGATGAGCTGATGAATATCAAGGGAATCGGGCCAAAATTGTTTG
AAAAAAACAAAGCAAGGCTGATGTTATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(80-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

51.852

95.07

0.493
  comEA Acinetobacter baumannii D1279779

48.148

95.07

0.458
  comEA Acinetobacter baylyi ADP1

42.105

93.662

0.394