Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   NQZ97_RS09140 Genome accession   NZ_CP102136
Coordinates   1876306..1877040 (-) Length   244 a.a.
NCBI ID   WP_043026224.1    Uniprot ID   -
Organism   Streptococcus suis strain M105052_S26     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1871306..1882040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS09115 (NQZ97_09115) scnR 1871834..1872484 (-) 651 WP_024376704.1 response regulator transcription factor Regulator
  NQZ97_RS09120 (NQZ97_09120) - 1872713..1873414 (+) 702 WP_015647212.1 CPBP family intramembrane glutamic endopeptidase -
  NQZ97_RS09125 (NQZ97_09125) - 1873667..1874398 (-) 732 WP_170244159.1 hypothetical protein -
  NQZ97_RS09130 (NQZ97_09130) - 1874395..1874967 (-) 573 WP_170238178.1 hypothetical protein -
  NQZ97_RS11955 - 1874927..1875052 (-) 126 WP_079270322.1 YSIRK-type signal peptide-containing protein -
  NQZ97_RS09135 (NQZ97_09135) - 1875328..1876176 (-) 849 WP_105130177.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  NQZ97_RS09140 (NQZ97_09140) amiE 1876306..1877040 (-) 735 WP_043026224.1 amino acid ABC transporter ATP-binding protein Regulator
  NQZ97_RS09145 (NQZ97_09145) - 1877033..1877722 (-) 690 WP_002938702.1 amino acid ABC transporter permease -
  NQZ97_RS09150 (NQZ97_09150) - 1877848..1878078 (-) 231 WP_002938704.1 DUF1797 family protein -
  NQZ97_RS09155 (NQZ97_09155) clpE 1878302..1880530 (+) 2229 WP_043026227.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  NQZ97_RS09160 (NQZ97_09160) - 1880713..1881174 (+) 462 WP_029174038.1 NUDIX hydrolase -
  NQZ97_RS09165 (NQZ97_09165) - 1881229..1881537 (+) 309 WP_002938710.1 DUF1827 family protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26825.00 Da        Isoelectric Point: 4.7252

>NTDB_id=614915 NQZ97_RS09140 WP_043026224.1 1876306..1877040(-) (amiE) [Streptococcus suis strain M105052_S26]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIGKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMGIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=614915 NQZ97_RS09140 WP_043026224.1 1876306..1877040(-) (amiE) [Streptococcus suis strain M105052_S26]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAGGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTGGTCGTTATTATCGGTCCATCTGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTGCCAACCAAGGGAACTGTTACATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCAAATATGACGGTATTAGATAATATTACTTTATCACCTAT
TAAGACAAAGGGAATTGGAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CGAATGCCTATCCACAAAGTCTTTCAGGTGGTCAGCAACAGCGGATCGCTATTGCACGTGGTCTGGCTATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGATCCTGAAATGGTCGGTGAAGTTCTTGCTGTTATGCAGGATTTGGC
CAAGTCAGGGATGACCATGGGTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACCAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365