Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NQZ97_RS06610 Genome accession   NZ_CP102136
Coordinates   1328902..1330638 (-) Length   578 a.a.
NCBI ID   WP_256787344.1    Uniprot ID   -
Organism   Streptococcus suis strain M105052_S26     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1323902..1335638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS06595 (NQZ97_06595) - 1324752..1326038 (-) 1287 WP_043024918.1 homoserine dehydrogenase -
  NQZ97_RS06600 (NQZ97_06600) - 1326143..1327066 (+) 924 WP_024377824.1 polysaccharide deacetylase family protein -
  NQZ97_RS06605 (NQZ97_06605) rcrQ 1327124..1328893 (-) 1770 WP_172073071.1 ABC transporter ATP-binding protein Regulator
  NQZ97_RS06610 (NQZ97_06610) rcrP 1328902..1330638 (-) 1737 WP_256787344.1 ABC transporter ATP-binding protein Regulator
  NQZ97_RS06615 (NQZ97_06615) - 1330831..1331073 (-) 243 WP_002940680.1 KH domain-containing protein -
  NQZ97_RS06620 (NQZ97_06620) rpsP 1331095..1331367 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  NQZ97_RS06625 (NQZ97_06625) - 1331492..1331800 (-) 309 WP_257110465.1 DUF4298 domain-containing protein -
  NQZ97_RS06630 (NQZ97_06630) pcp 1331800..1332447 (-) 648 WP_170238077.1 pyroglutamyl-peptidase I -
  NQZ97_RS06635 (NQZ97_06635) - 1332444..1333199 (-) 756 WP_170238076.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65082.33 Da        Isoelectric Point: 5.2934

>NTDB_id=614903 NQZ97_RS06610 WP_256787344.1 1328902..1330638(-) (rcrP) [Streptococcus suis strain M105052_S26]
MRLVWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIVTPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPFSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQETRFAEVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALAPLQTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKLDASLAELHEAADVAQARDFIESKEEQFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=614903 NQZ97_RS06610 WP_256787344.1 1328902..1330638(-) (rcrP) [Streptococcus suis strain M105052_S26]
ATGCGATTAGTTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTCTTGTTTGTAGT
GGTAAACTTGGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGCATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTAATTGTCCTGCTCGGGATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAATTG
ACTACCAATATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTGTTGAAACTAG
GTATTGTTACACCCTTGATGATGATTGCTTCTGTCATCATGACCTTGGTAACCAGTCCGAGCTTGGCCTGGACAGTAGCA
GTAGCCATGCCGTTTCTAGTTTTTGTTATTTTCTATGTGGCAACAAAAACTCGTCCTTTCTCTGAAAAACAACAGAAACG
ATTGGATACTATCAACCAGTATGTTCGTGAAAATCTCATGGGTTTGCGGGTCATTCGTGCCTTTACACGTGAAGAGTTCC
AAGAAACTCGTTTTGCAGAGGTCAATGAGGAATATACCGATATTTCCAAAAAACTCTTTAATCTGACTGGATTGACAGAG
CCGCTCTTCGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTCGCATTGGCTCCTTTGCAAACAGGCAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCTTTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTGTCTAGTCAGCGAATTCAAGAAGTGCTAGATATGCCGATTTCTATTTCTAAGAATGAA
GACGGCATAACTGAAACAGACACTCGTGGTTATCTAGAATTTGAAAATGTGACCTTTGCCTACCCTGGTGAAACGGAATC
GCCTGTTCTCCACAATATTTCATTTAAGGCTAAGCCTGGTGAAACCATTGCCTTTATCGGTTCGACTGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGTAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACCATCGCGGAAAA
TCTCAAATACGGTAAGCTAGACGCGAGTTTGGCAGAGTTGCATGAGGCGGCGGATGTGGCCCAGGCCAGAGACTTTATCG
AGAGCAAGGAGGAGCAGTTTGACACTCACTTGGCAGAGGGAGGAAGTAACCTTTCAGGTGGTCAAAAGCAACGTTTGTCC
ATTGCCCGTGCCATTGTCAAGCAGCCCGATATTTATATTTTTGATGATTCCTTCTCAGCATTGGATTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCACAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAATGAAGGTGAAATCGTTGGCCGCGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTATCGAGAAATCGCCAATTCTCAGCTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(20-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.667

100

0.401