Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LG951_RS08065 Genome accession   NZ_CP085037
Coordinates   1602502..1603281 (+) Length   259 a.a.
NCBI ID   WP_003210838.1    Uniprot ID   -
Organism   Bacillus pumilus strain BIM B-171     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1597502..1608281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG951_RS08045 (LG951_08045) trmFO 1598206..1599510 (+) 1305 WP_003212444.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LG951_RS08050 (LG951_08050) xerC 1599573..1600490 (+) 918 WP_003211704.1 tyrosine recombinase XerC -
  LG951_RS08055 (LG951_08055) hslV 1600505..1601050 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  LG951_RS08060 (LG951_08060) hslU 1601067..1602467 (+) 1401 WP_003211907.1 HslU--HslV peptidase ATPase subunit -
  LG951_RS08065 (LG951_08065) codY 1602502..1603281 (+) 780 WP_003210838.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LG951_RS08070 (LG951_08070) flgB 1603568..1603957 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  LG951_RS08075 (LG951_08075) flgC 1603957..1604409 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  LG951_RS08080 (LG951_08080) fliE 1604421..1604738 (+) 318 WP_003212183.1 flagellar hook-basal body complex protein FliE -
  LG951_RS08085 (LG951_08085) fliF 1604788..1606380 (+) 1593 WP_034619909.1 flagellar basal-body MS-ring/collar protein FliF -
  LG951_RS08090 (LG951_08090) fliG 1606392..1607408 (+) 1017 WP_003210883.1 flagellar motor switch protein FliG -
  LG951_RS08095 (LG951_08095) fliH 1607401..1608165 (+) 765 WP_226805178.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29060.31 Da        Isoelectric Point: 4.6614

>NTDB_id=614816 LG951_RS08065 WP_003210838.1 1602502..1603281(+) (codY) [Bacillus pumilus strain BIM B-171]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=614816 LG951_RS08065 WP_003210838.1 1602502..1603281(+) (codY) [Bacillus pumilus strain BIM B-171]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACGTTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTT
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGGACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAATCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCTGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471