Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NQZ98_RS02235 Genome accession   NZ_CP102135
Coordinates   429692..430480 (+) Length   262 a.a.
NCBI ID   WP_029172019.1    Uniprot ID   -
Organism   Streptococcus suis strain M106471_S40     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 424692..435480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS02215 (NQZ98_02215) - 425309..426268 (-) 960 WP_024416902.1 asparaginase -
  NQZ98_RS02220 (NQZ98_02220) - 426338..427703 (+) 1366 Protein_400 Cof-type HAD-IIB family hydrolase -
  NQZ98_RS02225 (NQZ98_02225) - 427719..428171 (-) 453 WP_044763230.1 universal stress protein -
  NQZ98_RS02230 (NQZ98_02230) - 428326..429540 (+) 1215 WP_029172018.1 pyridoxal phosphate-dependent aminotransferase -
  NQZ98_RS02235 (NQZ98_02235) codY 429692..430480 (+) 789 WP_029172019.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NQZ98_RS02240 (NQZ98_02240) - 430493..431023 (+) 531 WP_257116709.1 cysteine hydrolase family protein -
  NQZ98_RS02245 (NQZ98_02245) rplS 431289..431636 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  NQZ98_RS02250 (NQZ98_02250) - 431819..432493 (+) 675 WP_012774968.1 hydrolase -
  NQZ98_RS02255 (NQZ98_02255) gatC 432710..433012 (+) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  NQZ98_RS02260 (NQZ98_02260) gatA 433012..434478 (+) 1467 WP_044685671.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29279.33 Da        Isoelectric Point: 4.6797

>NTDB_id=614773 NQZ98_RS02235 WP_029172019.1 429692..430480(+) (codY) [Streptococcus suis strain M106471_S40]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELSGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=614773 NQZ98_RS02235 WP_029172019.1 429692..430480(+) (codY) [Streptococcus suis strain M106471_S40]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCTATTGCTGAACATCTATCAGCTATTATTGATTGTAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTACGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAATAAACAATTCCCAGAAGGATATGTA
AAAGCAGTCGCGCAGGTTTATGATACGCAGGTTAACTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTTGAATCACG
ATCGACCTATCCAAATGGTCTGACAACGATAGCCCCTATCCATGTGACGGGAATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCAGCAACAGTAGTTGGTATCCAGTTGCTTAAT
TTCCAACGGGAAGAAGATGAGAAGAATATTCGTCGTCGCGCTGCGGTCAATATGGCGGTAAATACGCTTTCTTATTCTGA
GATGAAGGCGGTGGCGGCTATTCTGGGTGAGTTGAGTGGCAATGAGGGGCAGCTGACTGCGTCTGTGATTGCGGACCGTA
TCGGTATTACTCGTTCGGTCATTGTCAATGCTTTGCGTAAGTTGGAGAGTGCGGGGATTATTGAAAGTCGTTCGCTTGGT
ATGAAAGGAACCTATTTGAAGGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

58.779

100

0.588
  codY Bacillus subtilis subsp. subtilis str. 168

52.033

93.893

0.489