Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NQZ84_RS04420 Genome accession   NZ_CP102094
Coordinates   887543..889285 (+) Length   580 a.a.
NCBI ID   WP_257047232.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 882543..894285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS04400 (NQZ84_04400) - 883112..883930 (+) 819 WP_002935241.1 NAD kinase -
  NQZ84_RS04405 (NQZ84_04405) - 883930..884823 (+) 894 WP_012027041.1 RluA family pseudouridine synthase -
  NQZ84_RS04410 (NQZ84_04410) pta 884841..885815 (+) 975 WP_012775151.1 phosphate acetyltransferase -
  NQZ84_RS04415 (NQZ84_04415) - 885817..887556 (+) 1740 WP_257047230.1 ABC transporter ATP-binding protein -
  NQZ84_RS04420 (NQZ84_04420) rcrQ 887543..889285 (+) 1743 WP_257047232.1 ABC transporter ATP-binding protein Regulator
  NQZ84_RS04425 (NQZ84_04425) - 889269..889661 (+) 393 WP_029681487.1 PaaI family thioesterase -
  NQZ84_RS04430 (NQZ84_04430) mutY 889951..891111 (+) 1161 WP_024408798.1 A/G-specific adenine glycosylase -
  NQZ84_RS04435 (NQZ84_04435) - 891774..892574 (-) 801 WP_024383594.1 helix-turn-helix domain-containing protein -
  NQZ84_RS04440 (NQZ84_04440) - 892705..893175 (+) 471 WP_024385761.1 hypothetical protein -
  NQZ84_RS04445 (NQZ84_04445) - 893195..893737 (+) 543 WP_024410480.1 hypothetical protein -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 64503.54 Da        Isoelectric Point: 5.0970

>NTDB_id=614691 NQZ84_RS04420 WP_257047232.1 887543..889285(+) (rcrQ) [Streptococcus suis strain 12RC1]
MRQSSFKELVRLVLHQPLRTSLMLVGTLVQVLLTVYLPILIGQAVDAVLIANGQVLLGILGKMVMVILLNTLVQWYLPLV
TNRLVYGMVADLREQVYVRLHQMPLSYLDRQSVGDLVARFSSDSEQLTNGLLMIFNQFFIGILTIFLTIFTMARLDLTMM
LLVVALTPVSLLVARYIAKKSYGYYRQQTQARGRESQLLEESISQLTLVQSFNAQEQFTQGFQVVNDQYATYSQQAIFAS
STVNPSTRFINAIIYALLAGLGALRIMTGNFTVGALTTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALDSID
DQAERKIDSEELKGAISFDNVSFSYSPDRSLIEHLDIDVKAGQKVAIVGPTGAGKSTMINLLMRFYDVTAGQIVLDGVSI
SQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAANADFFIRQLPQGYDTVLADGGEGLSQGQRQL
LSIARVFVKIPKILILDEATSSIDTRIEILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAE
QGVYYQMQTSQQTEEDESVR

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=614691 NQZ84_RS04420 WP_257047232.1 887543..889285(+) (rcrQ) [Streptococcus suis strain 12RC1]
ATGAGACAATCTAGTTTTAAGGAACTGGTCAGATTGGTTTTACACCAGCCCCTTCGAACGTCCTTGATGTTGGTGGGAAC
TTTGGTGCAAGTCCTTCTGACAGTTTATCTGCCTATCTTGATTGGTCAGGCAGTCGATGCAGTATTGATAGCAAATGGTC
AGGTCTTGCTCGGTATCTTAGGCAAAATGGTAATGGTTATCTTGCTTAATACGCTGGTGCAATGGTACTTACCTTTGGTA
ACCAATCGCTTGGTTTACGGAATGGTGGCCGATTTGCGTGAACAGGTCTATGTGAGGCTGCACCAGATGCCCCTATCTTA
TCTTGATCGTCAATCAGTCGGTGATTTGGTGGCTCGTTTCTCAAGTGATAGTGAGCAATTAACAAATGGTCTCTTGATGA
TTTTCAATCAATTTTTCATAGGTATCTTGACCATTTTCTTAACTATTTTCACTATGGCTAGGCTTGACTTGACGATGATG
TTGCTGGTTGTGGCATTGACTCCAGTTTCTCTGCTTGTGGCACGCTATATCGCTAAGAAATCCTATGGTTATTATAGACA
ACAGACTCAGGCACGTGGGAGGGAATCTCAGCTTTTGGAAGAGTCCATCAGTCAATTGACACTGGTTCAATCTTTCAATG
CTCAAGAGCAATTTACGCAAGGTTTTCAAGTTGTGAATGACCAGTATGCGACCTATTCCCAACAGGCTATCTTTGCCTCT
TCAACGGTCAATCCAAGCACTCGCTTTATCAATGCTATTATTTATGCCTTACTTGCAGGACTTGGAGCTCTGAGAATTAT
GACAGGGAATTTCACAGTGGGGGCACTGACAACTTTTCTCAATTATGCTAGTCAGTACAGCAAGCCTTTTAATGATATTT
CCTCGGTTCTATCGGAATTGCAGAGCGCCTTAGCTTGTGCAGACAGGCTGTTTGCTATCTTGGCTCTAGATAGCATTGAC
GATCAGGCTGAGCGGAAAATTGATTCAGAGGAGTTGAAGGGAGCTATTTCCTTTGACAATGTGTCTTTCTCCTATAGCCC
TGACCGTTCTCTGATAGAACATCTGGACATTGATGTCAAAGCTGGACAAAAAGTAGCCATTGTTGGACCTACTGGTGCTG
GTAAATCAACCATGATTAACCTTCTTATGCGTTTCTATGATGTGACGGCTGGTCAGATTGTCTTAGATGGTGTTTCGATT
AGCCAGTACAGTCGTGAGGATCTCCGCAGACAGATTGGGATGGTTTTACAGGAGACATGGATCAAATCTGGTACCATTCA
TGATAATATTGCCTATGGCTATCCAAATGCCACGCGGGAATTGGTCATTGAGGCGGCTAAGGCAGCTAATGCAGACTTCT
TTATTCGTCAGCTTCCACAGGGTTACGATACGGTTTTGGCAGATGGAGGAGAAGGCTTATCCCAGGGACAACGTCAGCTT
TTGTCTATTGCGCGTGTCTTTGTCAAGATACCTAAAATCCTGATTTTAGATGAGGCGACTTCCTCTATTGATACACGGAT
AGAAATTTTAGTACAGGAAGCATTTGCCAAATTGATGGAAGGACGGACCAGTTTTATTATTGCTCATCGCCTATCAACCA
TTCAATCAGCTGACTTGATTTTGGTCATGGTGGATGGAAAAATTGTTGAACAAGGGAATCATGAAGCGTTGATGGCTGAA
CAAGGCGTTTATTATCAAATGCAAACAAGTCAGCAGACAGAGGAGGATGAAAGTGTTAGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(354-501)

ABC transporter transmembrane region (ABC_membrane)

(22-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.801

97.759

0.379