Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   NQZ84_RS02115 Genome accession   NZ_CP102094
Coordinates   421169..423559 (+) Length   796 a.a.
NCBI ID   WP_044674783.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 416169..428559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS02095 (NQZ84_02095) - 417490..417972 (-) 483 WP_004194159.1 S-ribosylhomocysteine lyase -
  NQZ84_RS02100 (NQZ84_02100) - 418101..419714 (+) 1614 WP_011921986.1 ribonuclease Y -
  NQZ84_RS02105 (NQZ84_02105) gmk 419862..420488 (+) 627 WP_024408086.1 guanylate kinase -
  NQZ84_RS02110 (NQZ84_02110) rpoZ 420512..420826 (+) 315 WP_004194153.1 DNA-directed RNA polymerase subunit omega -
  NQZ84_RS02115 (NQZ84_02115) priA 421169..423559 (+) 2391 WP_044674783.1 primosomal protein N' Machinery gene
  NQZ84_RS02120 (NQZ84_02120) fmt 423691..424629 (+) 939 WP_257049605.1 methionyl-tRNA formyltransferase -
  NQZ84_RS02125 (NQZ84_02125) rsmB 424616..425929 (+) 1314 WP_079268803.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  NQZ84_RS02130 (NQZ84_02130) - 425967..426704 (+) 738 WP_004194145.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  NQZ84_RS02135 (NQZ84_02135) pknB 426704..428362 (+) 1659 Protein_385 Stk1 family PASTA domain-containing Ser/Thr kinase -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90906.78 Da        Isoelectric Point: 6.1960

>NTDB_id=614674 NQZ84_RS02115 WP_044674783.1 421169..423559(+) (priA) [Streptococcus suis strain 12RC1]
MLAQIIVDVPLMQTDQAYSYRVPAELEEGLKVGVRVHVPFGKGNRLIQGIVVDLIDEDDENSLQDLKELAEVLDYSPVLN
QEQFWLADQMRKSVFSYKITLLKSMLPSLLNSTYDKLLRPGLGLEMAEQISLFGDKEQIRFSDLDVTEQGKIMRLAQSGK
ILVDYVAKDKKQIKTEKWYRVCLEKLREADIGNRAKKRQQLREFLLEHSEDQLLSNLKSAYSADTLRYFQEKGYIEVWEE
EVSRTQGVFDKVEKTQALDLNPEQAIAVREIVASIGQESQTFLLQGVTGSGKTEVYLQVIDRVLKMGKTAIMLVPEISLT
PQMTNRFISRFGQQVAILHSGLSDGEKYDEWRKIEAGNAQVVVGARSAIFAPLTNLGVIIIDEEHEATYKQDSNPRYHAR
DVAKLRADYNRATLVLGSATPSLETRARASRGVYGRLTLNQRANPLARIPEVEVVDFRDYIGQQEASNFTPVLIDKIREK
LARKEQVVLMLNRRGYSSFVMCRDCGSVDQCPNCDISLTLHMDTKTMNCHYCGFQKGIPQTCPNCQSRSIRYYGTGTQKA
YDELQELLPEARILRMDVDTTKKKGAHEDLLERFGRGEADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERT
FQLLTQVAGRAGRADKEGEVLIQTYNPNHYAIAFAKEQDYEGFYRYEMGIRKNLGYPPYYFTVGLTFSHKSEEFVVKKAY
ETVAFLRQHLTDAIQILGPTPKPIARTHNLYHYQIILKYRHEDRLEEVLNQILDWTQERENQDLRLIIDNEPQNMM

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=614674 NQZ84_RS02115 WP_044674783.1 421169..423559(+) (priA) [Streptococcus suis strain 12RC1]
ATGTTAGCACAGATTATTGTAGACGTCCCTTTGATGCAGACAGATCAAGCTTATTCTTATCGAGTTCCAGCTGAGTTGGA
AGAGGGACTCAAGGTTGGCGTGCGTGTCCATGTACCCTTTGGTAAGGGAAATCGGCTGATTCAAGGGATTGTAGTTGATT
TGATTGATGAAGATGATGAAAATAGCTTACAAGACTTGAAAGAGCTTGCCGAGGTTTTGGACTATAGTCCTGTTCTCAAT
CAAGAGCAATTTTGGTTGGCGGACCAGATGAGAAAGTCGGTCTTCTCCTATAAAATTACCCTCTTAAAATCCATGTTGCC
CAGCTTGCTCAATTCGACCTATGACAAATTGCTCCGTCCAGGGCTTGGTTTGGAAATGGCAGAGCAGATTAGTCTGTTTG
GTGATAAGGAGCAGATTCGTTTTTCTGACTTGGACGTGACAGAGCAAGGGAAAATCATGCGTCTGGCCCAGTCAGGAAAA
ATCTTGGTAGACTATGTGGCCAAGGATAAGAAGCAAATCAAGACAGAAAAATGGTACCGAGTTTGTCTGGAGAAATTACG
AGAAGCAGACATCGGCAATCGAGCCAAGAAACGGCAGCAGTTAAGGGAATTTCTTCTGGAACACTCGGAAGACCAGCTTC
TTTCAAACCTAAAATCGGCCTATTCAGCTGATACGCTCCGCTATTTCCAAGAAAAAGGCTATATAGAAGTCTGGGAGGAG
GAAGTGTCGCGGACTCAGGGAGTTTTTGATAAGGTGGAAAAAACGCAGGCCTTGGATTTGAATCCAGAGCAGGCGATTGC
GGTTCGTGAGATTGTGGCCTCTATCGGTCAGGAAAGTCAGACATTTCTACTGCAAGGAGTGACAGGCTCTGGGAAGACGG
AAGTCTATCTCCAGGTTATTGATAGGGTCTTGAAAATGGGGAAAACGGCTATTATGCTGGTGCCTGAAATTTCCTTGACC
CCTCAGATGACCAATCGTTTTATTTCTCGTTTTGGCCAGCAGGTTGCCATTTTGCACTCGGGCTTGTCTGATGGTGAGAA
GTACGATGAGTGGCGGAAGATTGAGGCGGGAAATGCCCAGGTGGTTGTCGGGGCCCGTTCGGCCATTTTTGCCCCTTTGA
CAAACTTGGGTGTTATCATCATTGATGAGGAGCATGAGGCGACCTACAAGCAGGACAGCAATCCACGCTACCATGCGCGT
GATGTGGCAAAGTTGCGGGCTGATTATAATCGAGCGACCCTGGTCTTGGGTTCTGCTACGCCGAGTCTTGAAACACGGGC
TCGGGCTAGTCGCGGAGTCTATGGAAGACTGACTCTTAACCAGAGGGCCAATCCCTTGGCTCGTATTCCAGAAGTGGAAG
TTGTGGATTTCCGTGATTATATCGGTCAGCAGGAGGCTAGTAATTTTACCCCTGTTCTGATTGATAAGATTAGAGAAAAG
CTGGCTCGTAAGGAACAGGTCGTTCTTATGTTGAATAGGCGTGGTTATTCTTCTTTTGTCATGTGTCGTGATTGTGGTAG
CGTTGACCAGTGTCCCAACTGTGATATTTCCCTTACGCTCCATATGGACACAAAAACGATGAATTGCCATTATTGTGGTT
TTCAAAAGGGGATTCCTCAGACCTGTCCAAACTGTCAAAGTCGTTCTATTCGTTATTATGGGACGGGTACGCAAAAGGCC
TACGATGAATTGCAGGAACTCTTGCCAGAAGCTAGAATTTTGCGTATGGATGTGGATACTACCAAGAAAAAAGGTGCTCA
TGAGGACTTGCTCGAACGGTTTGGTCGAGGCGAGGCGGATATTCTTCTGGGAACTCAGATGATTGCCAAGGGCTTGGATT
TTCCAAATGTGACCCTAGTTGGGGTGCTCAATGCGGATACGGCTCTGAATTTGCCTGATTTTCGGTCTTCTGAGCGGACC
TTCCAGTTGCTAACTCAGGTAGCTGGTCGGGCTGGTCGAGCTGATAAGGAAGGGGAGGTCCTGATTCAGACCTATAACCC
CAATCATTATGCCATTGCTTTTGCCAAAGAGCAGGATTATGAAGGTTTCTATCGTTATGAGATGGGCATTCGGAAAAATC
TTGGTTATCCACCTTACTATTTTACGGTGGGTCTAACCTTTTCGCACAAGTCAGAAGAATTTGTCGTGAAAAAAGCCTAT
GAAACTGTAGCCTTTCTCCGTCAACACTTAACAGATGCAATTCAAATCTTGGGACCGACGCCCAAGCCTATTGCCAGAAC
TCATAATCTCTACCACTACCAGATCATCTTGAAATACCGGCATGAAGACCGTTTGGAAGAGGTATTGAATCAGATTTTGG
ATTGGACACAGGAGAGAGAAAATCAAGATTTGCGGCTGATTATTGACAATGAACCGCAGAATATGATGTGA

Domains

Predicted by InterProScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(4-107)

Primosomal protein N C-terminal domain (PriA_C)

(698-792)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(511-536)

Helicase conserved C-terminal domain (Helicase_C)

(570-654)

Type III restriction enzyme, res subunit (ResIII)

(259-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Bacillus subtilis subsp. subtilis str. 168

47.584

100

0.482