Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NQZ84_RS01830 Genome accession   NZ_CP102094
Coordinates   363995..364783 (+) Length   262 a.a.
NCBI ID   WP_023369388.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 358995..369783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS01810 (NQZ84_01810) - 359612..360571 (-) 960 WP_044680772.1 asparaginase -
  NQZ84_RS01815 (NQZ84_01815) - 360641..362006 (+) 1366 Protein_322 Cof-type HAD-IIB family hydrolase -
  NQZ84_RS01820 (NQZ84_01820) - 362022..362474 (-) 453 WP_257049582.1 universal stress protein -
  NQZ84_RS01825 (NQZ84_01825) - 362629..363843 (+) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -
  NQZ84_RS01830 (NQZ84_01830) codY 363995..364783 (+) 789 WP_023369388.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NQZ84_RS01835 (NQZ84_01835) - 364785..365336 (+) 552 WP_172065197.1 cysteine hydrolase family protein -
  NQZ84_RS01840 (NQZ84_01840) rplS 365602..365949 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  NQZ84_RS01845 (NQZ84_01845) - 366136..366810 (+) 675 WP_012774968.1 hydrolase -
  NQZ84_RS01850 (NQZ84_01850) gatC 367027..367329 (+) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  NQZ84_RS01855 (NQZ84_01855) gatA 367329..368795 (+) 1467 WP_044679634.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29334.37 Da        Isoelectric Point: 4.6190

>NTDB_id=614671 NQZ84_RS01830 WP_023369388.1 363995..364783(+) (codY) [Streptococcus suis strain 12RC1]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=614671 NQZ84_RS01830 WP_023369388.1 363995..364783(+) (codY) [Streptococcus suis strain 12RC1]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGACTGCAATTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
ATCGACTTATCCAAATGGTCTGACAACGATAGCGCCTATCCATGTGACGGGAATTCGTTTTGGTTCGCTTATTATTTGGC
GAAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCAGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.846

93.893

0.496