Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LG282_RS16705 Genome accession   NZ_CP085020
Coordinates   3254346..3256685 (-) Length   779 a.a.
NCBI ID   WP_404292384.1    Uniprot ID   -
Organism   Cytobacillus kochii strain SLM-180     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3249346..3261685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG282_RS16690 (LG282_16570) dtd 3250888..3251328 (-) 441 WP_251162639.1 D-aminoacyl-tRNA deacylase -
  LG282_RS16695 (LG282_16575) - 3251346..3253541 (-) 2196 WP_224935883.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LG282_RS16700 (LG282_16580) - 3253815..3254327 (-) 513 WP_095372443.1 adenine phosphoribosyltransferase -
  LG282_RS16705 (LG282_16585) recJ 3254346..3256685 (-) 2340 WP_404292384.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LG282_RS16710 (LG282_16590) - 3256737..3257075 (-) 339 WP_224935881.1 lipopolysaccharide assembly LapA domain-containing protein -
  LG282_RS16715 (LG282_16595) - 3257087..3257986 (-) 900 WP_404292386.1 cation diffusion facilitator family transporter -
  LG282_RS16720 (LG282_16600) secDF 3258259..3260526 (-) 2268 WP_251162636.1 protein translocase subunit SecDF -
  LG282_RS16725 (LG282_16605) - 3260758..3261045 (-) 288 WP_251162681.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 87628.15 Da        Isoelectric Point: 4.6870

>NTDB_id=614624 LG282_RS16705 WP_404292384.1 3254346..3256685(-) (recJ) [Cytobacillus kochii strain SLM-180]
MLHSKTRWNVRQSDEASVEELINGLNISSALATLLVNRGFNTVESARYFLFDEKKEFHDPFLLKDMDLAVSRIQRAIKNN
ESIMIFGDYDADGVTSTTVMMRTLTSLGADVQFYIPNRFTEGYGPNVPAFQYANDIGVSLIITVDTGIAAIEPAQAAKEM
GIDLIITDHHEPGPILPECLAIIHPKLPDSRYPFKELAGVGVAFKLAHALLGNVPNDLLEFVAIGTVADLVSLTDENRLI
VKKGLKKLQSTQNLGIRSLISLANVKLAEMTEETIGFTIAPRLNAVGRLDSADPAVELLLTEDALEAEALAEEIDQMNKE
RQSIVHTMAEEAIQQVEAEYPIEDNPVIVVGKEGWNPGVVGIVASRLVEKYYRPVICLSFDSQQGIAKGSARSITGFDLF
HNLSQSRDILPHFGGHPMAAGMTLKLDDVDILRQRLIQLAKEQLNEDDFIPITDLDAELRVADVNLEMIAEIQQLAPFGI
DNPKPKVMLKEANVSLLKRIGTNKTHLKITLEDNDVTLDGIGFGFGEYAEQISMDASLAIVGELSINEWNNIKKPQVFIQ
DIRIQEWQLFDIRGAKRLDTIVTHVHHETSEWIVFNKENYDKFLPYNPNVSLILSDEEAENIILDGKHVVFCDLPPQKER
IEAILRGKSPERIYCHFYQTNDIFSMATPNRDHFKWYYALIAKRGPFNLEERKAEVAKFKGWQVSYIDFMTEVFFELEFV
KIDNGMISLSDAKQKRDLSESQAFCIKQQQVKLENELLYSKAGQLKDWFDGLLQNAYVN

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=614624 LG282_RS16705 WP_404292384.1 3254346..3256685(-) (recJ) [Cytobacillus kochii strain SLM-180]
ATGTTACATTCTAAAACGCGTTGGAATGTTCGTCAATCAGATGAAGCCTCTGTAGAGGAACTCATAAACGGATTAAATAT
TTCATCTGCGTTGGCTACATTACTTGTTAATCGCGGCTTTAATACCGTCGAATCAGCACGGTATTTTTTATTTGATGAAA
AAAAAGAATTTCACGATCCTTTCTTATTAAAAGATATGGATTTGGCTGTTTCGCGTATACAACGAGCGATTAAAAATAAC
GAATCGATTATGATTTTTGGTGACTATGATGCCGATGGTGTTACGAGTACGACTGTCATGATGAGAACATTAACATCACT
AGGAGCAGATGTGCAATTTTACATACCTAACCGGTTTACGGAAGGTTATGGGCCAAATGTTCCGGCATTTCAATATGCTA
ATGATATCGGTGTTTCGTTAATTATTACTGTTGATACAGGAATTGCTGCTATCGAACCTGCGCAAGCGGCTAAAGAAATG
GGAATCGATTTAATTATTACGGATCATCATGAACCAGGCCCTATCTTACCAGAGTGTCTGGCAATCATTCATCCGAAACT
TCCTGACAGTCGTTATCCTTTCAAAGAACTTGCTGGAGTTGGTGTAGCATTTAAGCTTGCTCATGCTCTATTAGGTAATG
TGCCAAATGATTTATTAGAGTTTGTTGCAATTGGTACAGTGGCAGACCTTGTTTCATTGACGGATGAAAATCGCTTAATT
GTGAAGAAAGGTCTTAAAAAGCTGCAATCAACACAAAATCTTGGTATCCGATCATTAATATCGTTAGCTAATGTCAAATT
AGCAGAGATGACAGAAGAGACAATCGGCTTTACGATTGCACCAAGATTAAATGCTGTAGGTAGATTAGATTCTGCGGACC
CTGCAGTAGAATTGTTATTAACTGAAGATGCGCTAGAGGCTGAAGCGTTAGCTGAAGAAATCGACCAAATGAATAAAGAG
CGACAATCAATCGTTCATACGATGGCTGAAGAAGCGATTCAACAAGTTGAGGCGGAATATCCAATTGAGGACAATCCGGT
CATCGTAGTAGGTAAAGAAGGTTGGAACCCTGGGGTTGTTGGAATTGTGGCTTCAAGGCTAGTAGAGAAATACTATCGTC
CTGTTATATGTCTAAGTTTCGATTCACAACAAGGAATAGCTAAAGGATCTGCGAGGAGTATAACTGGCTTTGATCTGTTT
CATAATCTTTCGCAATCTCGAGATATCCTTCCTCATTTTGGTGGTCACCCAATGGCTGCAGGAATGACCTTGAAACTTGA
TGATGTTGATATACTTCGTCAAAGGCTTATCCAGCTTGCAAAGGAACAGTTAAACGAAGATGACTTTATACCGATTACTG
ATTTAGATGCTGAATTAAGGGTAGCTGATGTTAATTTAGAAATGATCGCTGAAATACAACAATTGGCACCGTTTGGTATT
GATAATCCTAAGCCGAAAGTAATGTTAAAAGAGGCGAATGTCAGTCTGTTAAAGAGAATTGGGACAAATAAAACACATCT
GAAGATCACATTAGAAGATAATGATGTGACATTGGATGGAATTGGATTTGGATTTGGAGAATACGCAGAACAAATTTCTA
TGGATGCTAGTCTTGCTATTGTAGGGGAACTTTCTATTAACGAATGGAATAATATAAAGAAGCCACAAGTCTTTATCCAA
GATATACGTATACAAGAATGGCAATTATTTGATATTAGAGGCGCCAAACGTTTAGACACAATTGTCACACATGTCCATCA
TGAAACCTCTGAATGGATCGTATTTAATAAGGAAAATTATGATAAATTTTTACCTTATAATCCCAATGTATCATTGATTC
TGTCTGATGAAGAGGCAGAAAATATTATATTAGATGGTAAGCATGTGGTTTTTTGTGATTTACCACCACAAAAGGAAAGA
ATAGAGGCTATTTTGCGTGGGAAAAGTCCAGAAAGAATTTATTGTCATTTCTATCAAACAAATGATATATTCTCTATGGC
GACTCCAAACCGTGACCATTTTAAATGGTATTATGCGCTCATTGCTAAGAGAGGGCCTTTTAACCTTGAAGAAAGAAAAG
CAGAGGTAGCTAAATTTAAAGGCTGGCAAGTTTCTTATATTGATTTTATGACTGAAGTGTTTTTTGAACTAGAATTTGTT
AAAATAGATAATGGGATGATTTCTCTTAGTGATGCAAAACAAAAGAGAGATTTATCGGAATCACAGGCTTTTTGCATAAA
GCAACAACAAGTAAAGTTAGAAAATGAATTGCTTTATTCAAAAGCAGGTCAATTAAAGGATTGGTTTGATGGGCTGCTTC
AGAATGCCTATGTGAATTGA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(456-561)

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.213

99.872

0.531