Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LG282_RS16585 Genome accession   NZ_CP085020
Coordinates   3229679..3232078 (-) Length   799 a.a.
NCBI ID   WP_404292363.1    Uniprot ID   -
Organism   Cytobacillus kochii strain SLM-180     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3224679..3237078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG282_RS16565 (LG282_16450) - 3227480..3228556 (-) 1077 WP_224935902.1 AI-2E family transporter -
  LG282_RS16570 (LG282_16455) - 3228709..3228840 (-) 132 WP_095372467.1 DUF3918 family protein -
  LG282_RS16575 (LG282_16460) - 3228866..3229057 (-) 192 WP_191811331.1 hypothetical protein -
  LG282_RS16580 (LG282_16465) - 3229077..3229547 (-) 471 WP_224935901.1 PRC-barrel domain-containing protein -
  LG282_RS16585 (LG282_16470) recD2 3229679..3232078 (-) 2400 WP_404292363.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LG282_RS16590 (LG282_16475) - 3232121..3232774 (-) 654 WP_404292365.1 tetratricopeptide repeat protein -
  LG282_RS16595 (LG282_16480) mnmA 3233095..3234210 (-) 1116 WP_404292367.1 tRNA 2-thiouridine(34) synthase MnmA -
  LG282_RS16600 (LG282_16485) - 3234240..3235382 (-) 1143 WP_289434173.1 cysteine desulfurase family protein -
  LG282_RS16605 (LG282_16490) cymR 3235407..3235826 (-) 420 WP_224935897.1 cysteine metabolism transcriptional regulator CymR -
  LG282_RS16610 (LG282_16495) - 3235879..3236538 (-) 660 WP_224935896.1 YitT family protein -

Sequence

Protein


Download         Length: 799 a.a.        Molecular weight: 90224.14 Da        Isoelectric Point: 4.8048

>NTDB_id=614623 LG282_RS16585 WP_404292363.1 3229679..3232078(-) (recD2) [Cytobacillus kochii strain SLM-180]
MDEQNSLDLFAEQKTYVKGKHLVTIFHNESNLYTVLRIRVLETNAQYEEKEAVITGYIPKIHEEETYTFIGEWKEHPKFG
LQFHVEQYKKEMPQTKEGVVNYLSGDLFKGIGKKTAQSIVDELGENAINSILNNPSLLDGIPKLASEKAKVLYDTLVENQ
GIEQVMIHLNQLGFGPQLSMKIFQTYKDQAIDILQKKPYQLVEDIEGIGFHRADEIGQQVGMSGSHPDRIKAACLYVLDS
ESAQAGHVYAEAEELLPAVKKLLEEKATEVIPYETISEAIIKLGEERKVIAEGQQLYLPSLFFSEKGIVTNIKRILNQTE
FNEQFPESEFLLALGQLEERLSVQYAPSQKDAIQKALMSPMMILTGGPGTGKTTVIQGIVELYGELHGCSLNPKDYKKEE
PFPFLLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFDHHEENPLEGKILIVDETSMVDIWLANQLFKAIPEEMQVI
LVGDEDQLPSVGPGQVLRDLLLSERIPSVMLTDIYRQSEGSSIIELAHEMKKGRLPQNITQQQKDRSFFQCQPGQIGTVI
GQVVRNAKKKGYLAKDIQVLAPMYRGPAGIDRLNKMIQEIFNPNEDGSRKEIAFGDVVYRIGDKVLQLVNQPENHVYNGD
MGEIISIFYAKENTEKQDMVIVSFDGVEATYTKQDLNQITHAYCCSVHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKQFLILCGDEEALKMGIQRLDDQSRRSNLRLKLQDEIFEGETIEAIDESLTYEDYLMKVDPLIGMENITPYDFLEAD

Nucleotide


Download         Length: 2400 bp        

>NTDB_id=614623 LG282_RS16585 WP_404292363.1 3229679..3232078(-) (recD2) [Cytobacillus kochii strain SLM-180]
ATGGATGAGCAGAATTCTTTAGATTTATTTGCTGAACAAAAAACGTATGTAAAAGGCAAGCATCTTGTGACTATTTTCCA
TAATGAGAGTAATCTTTATACGGTTTTACGTATTCGGGTGCTAGAGACAAATGCACAATATGAAGAGAAAGAAGCGGTCA
TTACTGGCTACATACCGAAAATCCATGAAGAGGAGACCTATACATTTATAGGGGAATGGAAGGAACATCCAAAGTTTGGG
TTGCAATTTCATGTAGAGCAGTACAAGAAAGAAATGCCTCAAACAAAAGAAGGTGTCGTTAATTATTTATCAGGTGACCT
CTTTAAAGGAATTGGTAAGAAAACGGCACAAAGTATTGTGGACGAGCTTGGGGAAAATGCGATCAATAGCATTTTAAATA
ATCCTTCATTATTAGATGGGATACCAAAATTAGCAAGTGAAAAAGCGAAAGTTTTATACGACACACTTGTGGAGAATCAA
GGAATCGAACAAGTCATGATTCACCTCAATCAACTTGGTTTTGGTCCACAACTATCTATGAAGATTTTTCAAACATATAA
AGATCAAGCAATAGATATTTTGCAAAAAAAACCTTATCAACTCGTAGAGGATATTGAAGGGATTGGCTTTCATCGGGCAG
ATGAGATTGGACAACAAGTGGGAATGTCCGGTAGTCATCCTGACCGTATTAAAGCAGCTTGTTTGTATGTGCTTGATAGT
GAAAGTGCACAGGCAGGTCACGTATATGCTGAAGCAGAAGAATTACTCCCTGCTGTCAAAAAACTATTAGAGGAAAAAGC
GACTGAGGTAATCCCTTACGAGACGATTAGTGAAGCAATCATAAAGCTTGGAGAAGAGAGAAAAGTGATTGCAGAAGGAC
AGCAGTTATATTTACCTTCTCTTTTCTTTTCTGAAAAGGGAATCGTTACAAATATTAAACGTATACTCAATCAAACGGAA
TTTAATGAACAGTTTCCCGAATCGGAATTTCTCCTTGCTTTGGGACAATTAGAAGAGCGACTTTCTGTACAATATGCGCC
ATCTCAAAAAGATGCAATTCAAAAAGCGTTAATGTCACCAATGATGATATTAACAGGTGGTCCAGGTACGGGAAAAACAA
CGGTTATCCAAGGCATTGTTGAATTGTATGGTGAATTACATGGTTGTAGTTTAAATCCGAAAGACTATAAAAAAGAAGAG
CCTTTTCCCTTTTTATTAGCTGCCCCTACTGGAAGAGCGGCGAAAAGAATGGCAGAATCTACAGGATTACCAGCTGTGAC
GATTCACAGATTGCTTGGTTGGAATGGAAGTGAGGGTTTTGACCATCATGAAGAAAATCCGCTTGAAGGGAAAATTCTTA
TTGTTGATGAAACTTCCATGGTTGATATTTGGCTAGCCAATCAACTTTTTAAAGCGATACCTGAAGAAATGCAAGTCATT
CTTGTTGGTGATGAAGATCAATTACCATCTGTGGGTCCAGGTCAAGTATTAAGAGACTTATTACTTTCTGAACGTATCCC
TTCGGTTATGTTGACAGATATTTATAGGCAATCGGAAGGTTCCTCAATTATTGAGTTAGCACATGAAATGAAAAAGGGAA
GATTACCACAAAATATTACTCAGCAACAAAAAGACCGTTCCTTTTTTCAATGCCAACCAGGTCAAATTGGAACGGTTATC
GGCCAAGTAGTGCGAAATGCAAAGAAAAAGGGTTATTTAGCAAAGGATATTCAAGTACTTGCACCGATGTATCGTGGTCC
GGCAGGTATTGATCGCCTTAATAAAATGATCCAAGAAATTTTCAACCCTAATGAAGATGGTAGTAGAAAGGAAATTGCTT
TTGGTGATGTTGTCTATCGCATTGGGGACAAGGTGTTGCAATTAGTCAATCAACCTGAAAACCACGTTTATAACGGTGAT
ATGGGTGAAATTATCTCCATATTTTATGCGAAAGAGAACACAGAGAAACAAGATATGGTTATTGTTTCTTTTGACGGAGT
GGAAGCTACGTATACAAAACAGGATTTAAATCAAATCACTCATGCCTATTGTTGTTCCGTTCATAAGTCACAAGGCAGTG
AGTTTCCCATTGTTATTCTTCCGGTCGTTAAAAGTTATTACCGGATGTTACGGAGGAATTTATTATATACTGCCATTACA
CGAAGCAAGCAGTTCCTTATATTATGTGGTGATGAAGAAGCGTTAAAAATGGGTATACAACGATTGGATGATCAATCGAG
GCGATCTAATTTACGATTGAAGTTACAGGATGAAATCTTCGAAGGAGAGACCATTGAAGCTATTGATGAATCATTAACAT
ATGAAGATTATTTGATGAAAGTCGACCCGTTGATAGGAATGGAAAATATCACACCTTATGATTTTTTAGAGGCTGATTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

AAA domain (AAA_30)

(345-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.827

100

0.618