Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   EL334_RS09095 Genome accession   NZ_AP019192
Coordinates   1694693..1695964 (+) Length   423 a.a.
NCBI ID   WP_001113208.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ASP0581     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1689693..1700964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL334_RS09040 (ASP0581_17080) - 1690165..1690314 (-) 150 Protein_1703 7,8-dihydro-8-oxoguanine-triphosphatase -
  EL334_RS09045 (ASP0581_17090) - 1690295..1691383 (-) 1089 WP_000719722.1 site-2 protease family protein -
  EL334_RS09050 (ASP0581_17100) - 1691402..1691872 (-) 471 WP_000257089.1 DUF3013 family protein -
  EL334_RS09055 - 1692150..1692964 (-) 815 Protein_1706 IS5-like element IS1515 family transposase -
  EL334_RS09065 (ASP0581_17130) - 1693036..1693488 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  EL334_RS09070 (ASP0581_17140) - 1693525..1693704 (-) 180 WP_033705165.1 type II toxin-antitoxin system HicA family toxin -
  EL334_RS09075 (ASP0581_17150) - 1693841..1694020 (-) 180 WP_001809903.1 hypothetical protein -
  EL334_RS09085 - 1694185..1694423 (-) 239 Protein_1710 hypothetical protein -
  EL334_RS09095 (ASP0581_17160) rarA 1694693..1695964 (+) 1272 WP_001113208.1 replication-associated recombination protein A Machinery gene
  EL334_RS09105 (ASP0581_17170) - 1696510..1697829 (-) 1320 WP_000502552.1 glycoside hydrolase family 32 protein -
  EL334_RS09110 (ASP0581_17180) - 1697839..1699455 (-) 1617 WP_023396415.1 ABC transporter substrate-binding protein -
  EL334_RS09115 (ASP0581_17190) - 1699484..1700374 (-) 891 WP_000797961.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46948.37 Da        Isoelectric Point: 5.9140

>NTDB_id=61449 EL334_RS09095 WP_001113208.1 1694693..1695964(+) (rarA) [Streptococcus pneumoniae strain ASP0581]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKASGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDHLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=61449 EL334_RS09095 WP_001113208.1 1694693..1695964(+) (rarA) [Streptococcus pneumoniae strain ASP0581]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTTTCCG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGTTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCACAAAGGATTGGTTTCCCAGAAGCCCGCATTCTCATCGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAGCATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCATTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

58.68

96.69

0.567

Multiple sequence alignment