Detailed information NTG0614468

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: LG296_RS12320
• Genome accession: NZ_CP085009
• Coordinates: 2475539..2478031 (-)
• Length: 830 a.a.
• NCBI ID: WP_107934570.1
• Uniprot ID: A0A318TVC0
• Organism: Ureibacillus chungkukjangi strain SLM-173
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2470539..2483031

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG296_RS12290 (LG296_12255)	-	2471070..2471753 (+)	684	WP_107934565.1	TerC family protein	-
LG296_RS12295 (LG296_12260)	-	2471769..2472923 (-)	1155	WP_107934662.1	MFS transporter	-
LG296_RS12300 (LG296_12265)	-	2473038..2473808 (-)	771	WP_107934566.1	sporulation protein	-
LG296_RS12305 (LG296_12270)	-	2473874..2474296 (-)	423	WP_107934567.1	DUF1801 domain-containing protein	-
LG296_RS12310 (LG296_12275)	-	2474427..2475077 (-)	651	WP_107934568.1	SIMPL domain-containing protein	-
LG296_RS12315 (LG296_12280)	-	2475150..2475542 (-)	393	WP_107934569.1	VOC family protein	-
LG296_RS12320 (LG296_12285)	recD2	2475539..2478031 (-)	2493	WP_107934570.1	ATP-dependent RecD-like DNA helicase	Machinery gene
LG296_RS12325 (LG296_12290)	hisA	2478210..2478968 (+)	759	WP_107934663.1	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	-
LG296_RS12330 (LG296_12295)	-	2479040..2480254 (-)	1215	WP_107934571.1	NupC/NupG family nucleoside CNT transporter	-
LG296_RS12335 (LG296_12300)	-	2480480..2481139 (-)	660	WP_107934572.1	lipopolysaccharide assembly protein LapB	-
LG296_RS12340 (LG296_12305)	mnmA	2481242..2482363 (-)	1122	WP_107934573.1	tRNA 2-thiouridine(34) synthase MnmA	-

Sequence

Protein

• Length: 830 a.a.
• Molecular weight: 92729.37 Da
• Isoelectric Point: 4.9522

>NTDB_id=614468 LG296_RS12320 WP_107934570.1 2475539..2478031(-) (recD2) [Ureibacillus chungkukjangi strain SLM-173]
MAENLNLFEVNKLFILGRPIVSIFHNATNMYSIVRVKIQETNLQYDDKEIIVVGYFPKLNEEELYRFTGVLKTHPKYGQQ
FQVETFVKEVPATEQGIIHYLSSDLFSGIGRKTAEIIVEKLGVDAIRIIMEDPYALDSVPRLNDEKKSKIRETLEQNLGL
EKVMIKLNEWGFGPQLGMKIYQTYREETITLLTENPFRLIEDVEGVGFGRADELGSKLGITGAHPDRIKAAVLHVLTNAS
LSDGHVYLDAEHVLPEVKSMLEQRQPQQIPYETISKAIIEMREESKICGEETRLYLPSLFYSEVGIASKILELLNQNGKP
RFSKDEIRKAIGEVEERLEVSYAETQAKAIECALNSSLMILTGGPGTGKTTVIRGFVEVYAELHGLSLNPKEYAQKEEPF
PIVLAAPTGRAAKRLAESTDLPAMTIHRLLGFNGQEKEEETEREIEGRLIIIDEMSMVDTWLAHQLLKSISEDVQVVFVG
DQDQLPPVGPGQVLKDLLASKKVPTVELIDVYRQAEGSTIIELAHQIKKGNIPSSVENKTSDRSFIKASADQVASVVTQV
VKSAVAKGQSIRDIQVLAPMYKGPAGIDMLNKKIQELVNPNNDGKRKELVFGDVTYRIGDKVLQLVNQPESNIFNGDMGE
VIAILRAKENIEKQDLLVVSYDGNEVTYQRGDLNQITLAYCCSIHKSQGSEFPTVIMPIVRGYSKMLRRNLLYTGITRAK
NFLILCGEPDVFTAGLSKTDDLLRLTSLKARLNPMEIDEIEKVEQGVTKEASKALNQSTEVNEQQEAVQVNGEVIAPVLN
VETAPYIHPLIGMKGLSPYDFLEDEKESVK

Nucleotide

• Length: 2493 bp

>NTDB_id=614468 LG296_RS12320 WP_107934570.1 2475539..2478031(-) (recD2) [Ureibacillus chungkukjangi strain SLM-173]
ATGGCAGAAAATCTTAATTTATTTGAAGTGAATAAATTGTTTATTCTTGGCCGTCCAATTGTGTCCATTTTTCATAATGC
GACGAATATGTATTCAATTGTTCGAGTAAAAATACAAGAAACAAATTTACAATATGACGACAAGGAAATTATCGTAGTAG
GCTATTTTCCAAAGCTAAACGAAGAAGAGTTATATCGATTTACGGGCGTTTTAAAAACTCATCCGAAATATGGGCAACAA
TTTCAAGTGGAAACCTTCGTCAAAGAGGTGCCAGCTACGGAACAGGGGATTATCCATTATTTATCGAGTGACTTATTTTC
AGGTATAGGACGAAAAACTGCTGAAATAATTGTGGAAAAATTAGGTGTTGATGCAATCCGTATTATTATGGAGGATCCCT
ATGCGCTAGATAGCGTCCCACGTTTAAATGACGAGAAAAAGTCCAAAATTCGTGAGACCTTAGAACAAAATCTCGGTCTA
GAGAAGGTAATGATTAAGCTCAACGAATGGGGTTTTGGTCCGCAACTTGGGATGAAAATCTATCAAACGTACCGTGAAGA
AACCATAACACTTCTTACCGAAAATCCGTTTCGACTTATAGAGGATGTTGAGGGTGTCGGATTTGGGCGGGCAGATGAGC
TGGGAAGTAAGCTAGGAATCACTGGAGCACATCCAGATCGCATAAAAGCGGCGGTATTACATGTGTTAACCAACGCATCG
CTTTCGGATGGACATGTGTATTTAGACGCAGAGCATGTTTTACCAGAAGTAAAATCGATGCTTGAACAACGCCAACCCCA
ACAAATTCCTTACGAGACAATCTCGAAAGCCATTATTGAAATGAGAGAGGAAAGTAAAATTTGCGGTGAAGAAACGCGAC
TTTATTTACCTTCTCTATTCTATAGTGAGGTTGGGATCGCCTCTAAAATTTTGGAGCTGTTAAATCAAAACGGAAAACCA
CGATTTTCAAAGGATGAAATTCGGAAAGCTATTGGGGAAGTTGAAGAACGGTTAGAGGTTTCTTATGCTGAAACACAAGC
GAAGGCCATCGAGTGTGCACTTAATTCCTCTCTTATGATTTTAACTGGTGGACCTGGGACAGGGAAAACAACTGTAATTC
GAGGGTTTGTAGAGGTATATGCAGAGCTTCATGGCCTGTCATTAAATCCAAAGGAATATGCACAAAAAGAAGAGCCGTTT
CCAATTGTATTAGCTGCACCTACAGGAAGAGCTGCGAAAAGATTAGCAGAGTCGACGGATCTTCCTGCAATGACGATTCA
TCGTTTGCTCGGATTTAACGGGCAAGAAAAAGAAGAAGAAACAGAACGTGAAATCGAGGGACGTCTTATCATTATTGATG
AGATGTCGATGGTCGATACTTGGCTAGCACATCAACTTCTAAAAAGTATAAGTGAGGATGTACAGGTTGTTTTTGTAGGA
GACCAAGACCAATTGCCGCCAGTTGGACCTGGACAAGTATTAAAGGATTTGTTGGCATCTAAAAAAGTGCCCACAGTAGA
ATTAATCGATGTTTACCGTCAAGCTGAGGGCTCTACGATTATTGAATTAGCCCATCAGATTAAAAAAGGAAATATCCCAA
GCTCTGTAGAAAATAAAACAAGTGATCGTTCTTTCATTAAAGCATCAGCAGATCAAGTTGCAAGTGTAGTTACACAGGTA
GTTAAAAGTGCTGTTGCAAAAGGTCAATCGATTCGTGATATTCAAGTATTAGCTCCAATGTACAAGGGACCAGCTGGAAT
CGATATGTTAAACAAAAAAATTCAGGAATTAGTTAATCCTAATAATGATGGGAAACGAAAAGAGCTTGTCTTTGGAGATG
TAACCTATCGAATTGGTGATAAAGTATTACAGCTTGTCAATCAACCAGAAAGTAATATCTTTAATGGTGACATGGGGGAA
GTTATTGCAATCCTTCGAGCAAAGGAGAACATCGAAAAGCAGGATTTACTTGTTGTTTCCTATGATGGTAATGAAGTTAC
ATACCAACGGGGAGATTTGAATCAAATTACCCTTGCCTATTGTTGTTCCATTCATAAGTCACAGGGGAGCGAATTCCCAA
CGGTCATTATGCCGATTGTGCGAGGCTATTCAAAAATGCTTCGGCGTAATCTCCTCTATACAGGAATTACGAGAGCTAAA
AACTTTTTAATTTTATGTGGAGAACCAGATGTCTTTACTGCCGGTCTGTCCAAAACAGATGATTTGTTGCGTTTAACAAG
CTTAAAGGCAAGATTGAATCCAATGGAAATCGATGAAATTGAAAAGGTTGAGCAAGGTGTTACGAAGGAAGCTTCAAAGG
CCTTGAATCAATCGACAGAAGTAAACGAGCAACAAGAAGCGGTGCAAGTTAATGGAGAGGTAATCGCGCCAGTCTTAAAT
GTGGAAACCGCTCCTTATATTCATCCTTTAATAGGGATGAAAGGTTTATCGCCGTATGATTTTTTAGAGGATGAAAAGGA
GAGTGTAAAATGA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (590-651)

• Helix-hairpin-helix containing domain (HHH_RecD2) (159-247)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (679-726)

• AAA domain (AAA_30) (342-548)

3D structure

• AlphaFold DB: A0A318TVC0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	52.41	97.47	0.511