Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LG311_RS15585 Genome accession   NZ_CP085008
Coordinates   3001066..3003411 (-) Length   781 a.a.
NCBI ID   WP_404347041.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain SLM-179     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2996066..3008411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG311_RS15565 (LG311_15505) - 2997026..2997223 (+) 198 WP_404347037.1 hypothetical protein -
  LG311_RS15570 (LG311_15510) dtd 2997503..2997943 (-) 441 WP_404347038.1 D-aminoacyl-tRNA deacylase -
  LG311_RS15575 (LG311_15515) - 2997960..3000158 (-) 2199 WP_404347039.1 RelA/SpoT family protein -
  LG311_RS15580 (LG311_15520) - 3000539..3001051 (-) 513 WP_010195994.1 adenine phosphoribosyltransferase -
  LG311_RS15585 (LG311_15525) recJ 3001066..3003411 (-) 2346 WP_404347041.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LG311_RS15590 (LG311_15530) - 3003555..3003713 (-) 159 WP_404347042.1 hypothetical protein -
  LG311_RS15595 (LG311_15535) - 3003953..3004276 (-) 324 WP_404347043.1 lipopolysaccharide assembly LapA domain-containing protein -
  LG311_RS15600 (LG311_15540) - 3004294..3005184 (-) 891 WP_404347045.1 cation diffusion facilitator family transporter -
  LG311_RS15605 (LG311_15545) secDF 3005302..3007551 (-) 2250 WP_404347046.1 protein translocase subunit SecDF -
  LG311_RS15610 (LG311_15550) - 3007728..3008009 (-) 282 WP_169292471.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 781 a.a.        Molecular weight: 87979.12 Da        Isoelectric Point: 4.8423

>NTDB_id=614428 LG311_RS15585 WP_404347041.1 3001066..3003411(-) (recJ) [Sutcliffiella horikoshii strain SLM-179]
MLASKSRWNVNVSSMEQVEQLAQSLDIAPLIASLLVNRGFDTIDAAKEFLYTNDQEFHDPFLMEDMDKLVERVNQAIAKE
EKILVFGDYDADGVSSTTVMMTALREIGALVDFYIPNRFTEGYGPNENAFKQAKENGYSVIITVDTGISAINEAKVAKEL
GLDLIITDHHEPGPELPDAFAIIHPKKETCSYPFDDLAGVGVAYKVAHALLGKNPEHLLDVAAIGTIADLVPLVGENRLL
ASKGIKKMQQTTRVGLKALLQKCGVELHTVTEETVGFSIGPRINAVGRLDNADPAVHLLMTNDPEEAKMLAEEMESYNKE
RQQIVTQITEEAIQQVEEKYPPEDNGFIIVEGDNWNAGVIGIVASRLVDRFYRPTIVLSLDEDKGLAKGSARSIAGFDLF
ENLSECRDILPHFGGHPMAAGMTLKIEDVHELRQRMNQKALEILTDEDFTPITDVDIECKVEEVTLATIEQLEMLAPFGV
SNPKPKVLVKGVLPQQIRQIGNKSNHLKLVIEQDGSSLDCVGFGFGETYHHVSPGASLDVLGELSINEWNNFRKPQLFLK
DIRVTDWQLFDIRSIKQLNQTLNGIDKTKLHILYFNESTLEEINLHADLRPYASMVTNDTNEDLTGKYVVILDIPSEEAL
LSNLLENSTPERIYASFYQKENHFFSTIPTREHFKWFYALLAKKGSFDLRKHAEDIAKHRGWSKETVDFISQVFFDLEFV
TIDKGFIALNHAAKKRDFEESPTYRKKQQQVMLENLFLYSSYKQLKVWFDQHLTKQCTVHS

Nucleotide


Download         Length: 2346 bp        

>NTDB_id=614428 LG311_RS15585 WP_404347041.1 3001066..3003411(-) (recJ) [Sutcliffiella horikoshii strain SLM-179]
TTGTTAGCTTCTAAATCAAGATGGAATGTAAATGTATCGAGTATGGAACAGGTTGAGCAATTAGCACAGTCTTTAGATAT
TGCCCCTCTTATTGCTTCCCTTTTGGTAAACAGAGGGTTTGACACGATAGATGCAGCAAAAGAATTTTTATATACAAATG
ATCAAGAGTTTCATGATCCTTTTTTAATGGAGGATATGGACAAACTCGTGGAGAGAGTAAATCAAGCGATTGCAAAGGAA
GAGAAGATCCTTGTGTTTGGCGACTATGATGCAGATGGAGTCAGCAGTACCACCGTTATGATGACTGCGTTACGAGAAAT
CGGTGCACTGGTTGATTTTTATATCCCAAACCGTTTTACAGAGGGCTATGGGCCAAATGAAAATGCCTTCAAACAAGCAA
AAGAAAATGGATATTCTGTTATTATCACAGTCGATACAGGAATCTCTGCCATCAATGAAGCAAAAGTGGCAAAAGAACTA
GGGTTGGACCTTATCATCACCGATCACCATGAGCCTGGACCAGAATTGCCTGATGCTTTTGCGATCATTCACCCGAAAAA
AGAAACTTGCTCTTACCCGTTTGATGACCTTGCGGGTGTTGGTGTTGCCTACAAGGTCGCGCATGCACTCCTTGGGAAAA
ATCCAGAGCATCTCCTTGATGTGGCAGCGATCGGAACCATTGCCGATTTGGTCCCGTTGGTCGGGGAGAACAGACTGCTT
GCCTCTAAAGGAATCAAAAAGATGCAACAGACCACACGTGTCGGTTTAAAGGCACTTCTTCAAAAATGCGGAGTGGAATT
GCATACGGTAACAGAAGAGACAGTAGGGTTTTCGATCGGACCGAGAATCAATGCGGTAGGGCGACTGGACAATGCAGACC
CGGCAGTTCATCTTCTTATGACAAATGATCCGGAAGAAGCCAAAATGCTTGCAGAGGAAATGGAAAGTTACAACAAAGAG
AGACAGCAAATTGTGACTCAAATTACCGAAGAAGCCATTCAGCAGGTGGAAGAGAAATACCCGCCAGAGGATAATGGTTT
TATTATTGTAGAGGGAGATAACTGGAATGCGGGAGTGATCGGGATTGTGGCATCTCGCCTTGTGGACCGCTTTTACCGAC
CAACCATCGTGCTTAGCCTTGATGAAGATAAAGGGTTGGCAAAAGGTTCTGCGCGTTCCATTGCCGGATTTGATCTCTTT
GAAAACCTTTCTGAATGCCGGGATATTTTGCCTCATTTCGGTGGACATCCAATGGCGGCCGGGATGACGTTGAAAATAGA
AGATGTACATGAGCTCAGACAAAGAATGAATCAAAAGGCGTTAGAAATTCTGACAGATGAAGATTTCACTCCTATTACGG
ACGTTGATATTGAATGCAAAGTGGAAGAGGTAACACTTGCAACAATAGAGCAGTTGGAAATGCTTGCTCCATTCGGAGTG
TCCAATCCAAAACCAAAAGTGCTGGTAAAAGGTGTACTGCCACAGCAAATTCGCCAGATTGGAAACAAAAGCAACCATCT
GAAACTGGTCATTGAACAGGATGGCAGTTCACTAGATTGTGTAGGCTTTGGCTTTGGAGAAACGTATCATCACGTCTCCC
CTGGGGCATCTCTTGACGTTTTGGGAGAACTCTCTATCAATGAATGGAACAATTTCCGCAAGCCTCAGCTTTTTTTGAAA
GATATCAGAGTGACAGATTGGCAACTTTTTGATATCCGTTCCATTAAACAGTTAAATCAAACGCTAAATGGAATAGATAA
AACAAAACTCCACATCCTATATTTTAATGAATCTACTTTGGAAGAAATTAATCTGCATGCTGATTTACGACCATATGCAA
GTATGGTAACAAATGATACTAATGAAGATTTGACAGGAAAGTATGTTGTCATACTGGATATCCCTTCTGAAGAAGCGCTC
CTATCAAATTTATTAGAAAATAGTACGCCTGAGCGAATCTATGCGTCCTTTTATCAAAAGGAGAACCATTTCTTTTCTAC
CATCCCGACGAGAGAGCACTTTAAATGGTTTTACGCATTACTTGCTAAAAAAGGTTCCTTTGACCTCAGAAAGCATGCAG
AAGATATCGCCAAACACCGCGGCTGGTCAAAAGAAACAGTGGATTTCATATCACAGGTGTTTTTTGACTTAGAATTTGTT
ACAATAGACAAGGGTTTTATCGCATTAAACCATGCAGCGAAAAAAAGGGACTTTGAAGAGTCTCCAACTTATCGTAAAAA
GCAACAGCAAGTGATGCTTGAAAACTTGTTTTTATATTCTTCATATAAACAATTAAAAGTGTGGTTTGATCAGCATCTAA
CCAAGCAATGCACTGTTCATTCATAG

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.172

99.744

0.54