Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LG291_RS19560 Genome accession   NZ_CP084990
Coordinates   3839973..3842342 (-) Length   789 a.a.
NCBI ID   WP_404355621.1    Uniprot ID   -
Organism   Cytobacillus firmus strain WLG-456     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3834973..3847342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG291_RS19545 (LG291_19380) dtd 3836250..3836690 (-) 441 WP_048010352.1 D-aminoacyl-tRNA deacylase -
  LG291_RS19550 (LG291_19385) - 3836705..3838900 (-) 2196 WP_061791146.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LG291_RS19555 (LG291_19390) - 3839470..3839982 (-) 513 WP_394580088.1 adenine phosphoribosyltransferase -
  LG291_RS19560 (LG291_19395) recJ 3839973..3842342 (-) 2370 WP_404355621.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LG291_RS19565 (LG291_19400) - 3842501..3842818 (-) 318 WP_394580092.1 lipopolysaccharide assembly LapA domain-containing protein -
  LG291_RS19570 (LG291_19405) - 3842843..3843745 (-) 903 WP_394580094.1 cation diffusion facilitator family transporter -
  LG291_RS19575 (LG291_19410) secDF 3843877..3846141 (-) 2265 WP_404355624.1 protein translocase subunit SecDF -
  LG291_RS19580 (LG291_19415) - 3846440..3846736 (-) 297 WP_274575612.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88254.74 Da        Isoelectric Point: 5.2681

>NTDB_id=614224 LG291_RS19560 WP_404355621.1 3839973..3842342(-) (recJ) [Cytobacillus firmus strain WLG-456]
MLHSRTRWIVRQTEEDKVQRLSKELNISPLAASLLINRGMDTVDSARYFLMDNEQEFHDPFLMTDMAIAVSRIKEAIEKQ
EPILIFGDYDADGVTSTSVMMMALKDLGADVQFYIPNRFTEGYGPNIPAFEHAAEIGIRLIITVDTGISAVNEAKAAREL
GMDLIITDHHEPGPELPEAFAIVHPKHPESRYPFRELAGVGVAFKLAHALYGEMPEHLLEVAAIGTIADLVSLTGENRLI
AKRGIQKLKSTKNPGLNALFKVARIELPSISEETIGFTIGPRLNAAGRLESADPAVDLLLTNDPYEAQAIAEEIEMLNKE
RQSIVNDIAAQAVHEVETNFPISENSVIVVGKEGWNAGVIGIVASKLVEKFYRPAIVLSYDSEKGLAKGSARSIEGFDLF
KNLSECRDILPHFGGHPMAAGMTFSIDSVDDLRSRLNTLANEQLSEEDFIPVTSIDGVFHLKDINLSSIAEMQLLAPFGM
GNAKPKVMIKDANIAAMRKIGSEQNHIKVTIEKDGSSLDGVGFGLGHLHEHISPYSKLSVIGELSINEWNNIKKPQIFLQ
DMAVNSWQLFDIRSLKRLERLQSVIPEANTTWIFFNEEYISKYKTFAGEKMKKITSAEDAEAIKIEGSNVVLADLPPSKE
ILAQVFSGKKPARIYAHFYKEDSDFFSTLPTRDHFKWYFALIAKKGSIDIRRHGNDIAKHKGWSRETVDFMSQVFFELEF
VKINNGVISLNNTSTKRDLADSRTYQLKQAQYTLESDLLYSSFQQLKDWFDEVMQGAVKLEEAKEEKWT

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=614224 LG291_RS19560 WP_404355621.1 3839973..3842342(-) (recJ) [Cytobacillus firmus strain WLG-456]
ATGTTACATTCAAGAACGCGATGGATTGTTCGGCAAACAGAGGAGGATAAAGTACAGCGGCTTTCAAAGGAACTGAATAT
TTCTCCTCTTGCAGCATCGCTGTTAATTAATCGCGGAATGGATACCGTTGATTCAGCACGGTATTTTCTGATGGATAATG
AGCAGGAATTTCATGATCCTTTTTTAATGACAGATATGGCAATTGCTGTTTCCAGAATAAAAGAAGCTATTGAAAAACAG
GAACCTATTTTAATTTTTGGTGATTATGATGCGGATGGTGTGACCAGCACTTCTGTCATGATGATGGCACTTAAAGATCT
CGGTGCTGATGTCCAATTCTACATACCAAATCGTTTTACGGAAGGCTATGGGCCAAATATCCCGGCTTTTGAACATGCAG
CCGAAATTGGCATCCGTTTAATTATTACTGTAGATACTGGAATTTCTGCTGTAAATGAAGCAAAAGCTGCAAGAGAGCTT
GGAATGGATTTGATCATTACAGATCACCATGAGCCCGGCCCCGAGCTTCCTGAAGCATTCGCCATTGTGCATCCTAAGCA
TCCGGAGAGCAGATACCCGTTCCGGGAACTTGCCGGTGTTGGGGTTGCATTTAAGCTTGCACATGCGCTTTATGGTGAAA
TGCCTGAACACCTGTTGGAGGTAGCTGCGATCGGCACAATAGCTGATCTTGTTTCTTTAACAGGAGAAAACAGACTTATT
GCCAAGCGCGGGATTCAAAAGCTGAAATCAACTAAAAATCCAGGCTTGAATGCTTTGTTTAAAGTGGCACGAATCGAGCT
TCCATCCATTAGTGAGGAAACGATCGGCTTTACAATCGGCCCTCGCCTCAATGCAGCAGGCAGGCTAGAAAGCGCGGATC
CTGCTGTGGATCTGCTTTTGACAAATGATCCTTATGAAGCACAAGCCATTGCCGAAGAAATTGAAATGCTGAACAAAGAA
AGGCAATCTATCGTCAATGACATTGCAGCGCAAGCGGTTCATGAGGTTGAAACAAATTTCCCAATCAGTGAGAATTCAGT
TATTGTTGTCGGGAAAGAAGGCTGGAACGCCGGGGTAATCGGAATAGTAGCTTCGAAGCTTGTTGAAAAGTTTTACCGCC
CGGCCATTGTCCTAAGTTATGACAGTGAAAAAGGGCTGGCGAAGGGTTCAGCAAGAAGTATAGAAGGTTTTGATCTGTTC
AAGAATCTTTCTGAATGCCGGGATATCCTGCCTCACTTTGGAGGTCACCCGATGGCAGCGGGTATGACTTTTTCCATTGA
TTCGGTTGATGATCTGAGAAGCAGACTGAATACTCTTGCAAATGAACAGCTGAGTGAGGAAGATTTTATTCCTGTAACCT
CTATTGATGGGGTTTTCCATTTAAAAGATATCAATCTTTCTTCCATTGCGGAAATGCAGCTGCTTGCTCCATTCGGGATG
GGAAATGCGAAACCAAAAGTAATGATAAAAGATGCTAATATTGCAGCTATGAGAAAGATCGGATCTGAACAAAACCATAT
TAAAGTCACAATCGAGAAAGATGGATCTTCACTTGATGGCGTCGGTTTTGGGCTAGGGCATTTGCATGAGCATATTTCAC
CATACTCCAAGCTGTCCGTTATTGGTGAATTATCCATTAATGAATGGAATAATATTAAAAAACCGCAAATTTTCCTGCAG
GATATGGCAGTAAACTCCTGGCAGCTCTTTGATATCCGGAGTTTAAAACGGCTTGAAAGGCTCCAAAGTGTCATTCCTGA
GGCAAACACAACCTGGATCTTTTTTAATGAGGAATATATTTCTAAATATAAAACATTTGCAGGGGAAAAGATGAAGAAAA
TAACATCTGCAGAAGACGCAGAAGCCATAAAAATAGAAGGCTCAAATGTTGTTCTGGCTGATTTGCCGCCTTCAAAGGAA
ATTCTTGCACAGGTTTTCTCCGGGAAAAAACCTGCCAGAATTTATGCTCATTTCTATAAAGAAGACAGTGACTTTTTTAG
CACATTACCAACGAGAGACCATTTTAAATGGTACTTTGCCCTGATTGCTAAAAAAGGTTCAATTGATATCAGGCGTCATG
GGAATGATATAGCGAAGCATAAAGGATGGAGCAGAGAGACAGTAGATTTTATGTCTCAAGTGTTTTTTGAATTGGAATTT
GTTAAAATAAATAATGGTGTCATTTCGTTAAACAATACATCCACTAAACGTGATTTAGCTGATTCACGAACTTATCAGCT
TAAACAGGCACAATACACTCTTGAGAGCGATTTGCTCTATTCATCCTTTCAGCAGCTCAAAGACTGGTTTGATGAAGTTA
TGCAAGGGGCTGTAAAACTTGAGGAGGCAAAGGAAGAAAAATGGACTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(314-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.814

98.733

0.541