Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NQD68_RS09280 Genome accession   NZ_CP101993
Coordinates   1824212..1826197 (-) Length   661 a.a.
NCBI ID   WP_000141743.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain BCJB3344     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1819212..1831197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQD68_RS09265 (NQD68_09285) - 1819891..1820085 (+) 195 Protein_1756 restriction endonuclease subunit S -
  NQD68_RS09270 (NQD68_09290) - 1820098..1821678 (+) 1581 WP_000818330.1 type I restriction-modification system subunit M -
  NQD68_RS09275 (NQD68_09295) - 1822302..1824074 (-) 1773 WP_000247895.1 DUF4365 domain-containing protein -
  NQD68_RS09280 (NQD68_09300) recP/tkt 1824212..1826197 (-) 1986 WP_000141743.1 transketolase Machinery gene
  NQD68_RS09285 (NQD68_09305) fsa 1826246..1826890 (-) 645 WP_000667769.1 fructose-6-phosphate aldolase -
  NQD68_RS09290 (NQD68_09310) alsE 1826908..1827597 (-) 690 WP_001174252.1 D-allulose 6-phosphate 3-epimerase -
  NQD68_RS09295 (NQD68_09315) - 1827609..1828712 (-) 1104 WP_000654240.1 PTS fructose transporter subunit IIC -
  NQD68_RS09300 (NQD68_09320) - 1828725..1829174 (-) 450 WP_000388079.1 PTS sugar transporter subunit IIA -
  NQD68_RS09305 (NQD68_09325) - 1829188..1829499 (-) 312 WP_000706302.1 PTS fructose transporter subunit IIB -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 71628.79 Da        Isoelectric Point: 4.7179

>NTDB_id=614224 NQD68_RS09280 WP_000141743.1 1824212..1826197(-) (recP/tkt) [Streptococcus agalactiae strain BCJB3344]
MTFDAVDQLAVNTVRTLSMDAIQAANSGHPGLPMGAAPMAYVLWNKYMNINPKTSRNWTNRDRFILSAGHGSAMLYSLLH
LAGYDLSIDDLKNFRQWGSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAKYNKPGFNIVDHYTFALNGDG
DLMEGVSQEVASLAGHLKLGKLITLYDSNDISLDGPTSMAFTEDVKGRFEAYGWQHILVKDGNDLDAIAKAIEEAKAETE
KPTIIEVKTIIVFGSEKQGTSAVHGAPLGAEGIVFTKNAYKWTYEDFIVPDEVKARFQEGLQARGEQAENAWNELFAKYE
AEYPELAKGYKEVFSNEPVSVELAAHELGSSKASRVSSQEAIQQISEQVASFWGGSADLSASNNTMVKVEKDFQPGQYEG
CNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQSLPTMYVMTHDSIAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKHALAEIDKPTMLVLTRQNLPVLEGTKELAEEGLNKGAYILSEAKGEMDGIIIATGSEV
KLAMDTQAALAEEGIHVRVVSMPSQNIFDAQSDAYKEEILPATITKRLAIEAASSFGWAKYVGLAGKTLTIDTWGASAPG
NRIFEEYGFTTENATVLYKAL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=614224 NQD68_RS09280 WP_000141743.1 1824212..1826197(-) (recP/tkt) [Streptococcus agalactiae strain BCJB3344]
ATGACATTCGATGCAGTTGACCAGTTGGCAGTAAACACTGTCCGTACGCTTTCAATGGATGCTATCCAAGCAGCTAATTC
AGGCCACCCCGGTTTACCAATGGGGGCAGCTCCAATGGCTTATGTTCTATGGAATAAATACATGAACATTAATCCTAAAA
CAAGCCGTAACTGGACAAACAGAGACCGTTTTATTCTTTCTGCAGGACATGGATCTGCAATGCTATACAGCTTATTACAT
TTAGCTGGTTACGACCTTTCAATCGATGATTTGAAAAATTTCCGTCAATGGGGTTCAAAAACGCCAGGACATCCTGAAGT
CAATCATACAGATGGTGTAGAAGCAACAACAGGACCGCTAGGACAAGGTATCGCAAACGCTGTAGGTATGGCAATGGCAG
AAGCTCACCTTGCTGCAAAATACAACAAACCAGGTTTCAATATCGTTGACCATTATACTTTTGCTTTAAATGGTGATGGT
GACTTAATGGAAGGTGTCAGTCAAGAAGTCGCAAGTTTAGCAGGTCACTTAAAACTTGGAAAATTAATCACTTTATATGA
TTCAAATGACATTTCTCTAGATGGCCCTACATCTATGGCCTTCACTGAGGATGTTAAAGGACGTTTTGAAGCTTATGGAT
GGCAACATATCCTCGTTAAAGACGGCAATGACTTAGATGCTATTGCCAAAGCTATCGAAGAGGCAAAAGCTGAAACTGAA
AAACCAACTATTATTGAAGTTAAAACAATTATTGTTTTTGGATCTGAAAAACAAGGAACTTCAGCAGTTCATGGTGCCCC
ACTTGGAGCAGAAGGCATTGTCTTTACTAAAAATGCTTACAAATGGACCTATGAAGATTTCATCGTTCCTGACGAAGTGA
AAGCTCGTTTCCAAGAAGGATTACAAGCACGTGGTGAACAAGCTGAAAATGCTTGGAATGAACTCTTTGCAAAATATGAA
GCGGAATATCCAGAACTTGCTAAAGGCTATAAAGAAGTCTTTTCAAATGAACCAGTTTCAGTAGAATTAGCTGCGCATGA
ACTTGGGTCATCAAAAGCTAGCCGTGTTTCAAGTCAAGAGGCTATCCAACAAATCTCTGAACAAGTCGCATCATTCTGGG
GTGGTTCGGCAGACCTTTCAGCCTCAAACAACACAATGGTTAAAGTTGAAAAAGACTTCCAACCAGGTCAATATGAAGGC
TGCAATATCTGGTTTGGTGTACGTGAATTTGCCATGGCAGCTGCGATGAACGGTATTGCTCTTCATGGTGGTACTCGCGT
TTATGGTGGTACATTCTTCGTCTTCTCAAACTATCTATTACCTGCAGTACGTATGGCAGCACTGCAAAGCTTACCAACCA
TGTATGTCATGACACATGACTCCATTGCCGTTGGTGAAGACGGTCCAACTCATGAACCAATTGAACAGTTAGCAAGTGTC
CGTTCAATGCCAAACTTGAACGTCATTCGTCCAGCGGATGGTAATGAAACCAATGCCGCATGGAAACATGCCTTAGCAGA
AATAGATAAACCAACAATGCTAGTGTTAACACGACAAAACTTGCCAGTTCTTGAAGGAACAAAAGAATTAGCAGAAGAAG
GTTTAAATAAGGGTGCTTATATCTTGTCAGAAGCCAAAGGCGAAATGGATGGTATCATCATTGCGACGGGATCTGAAGTA
AAATTAGCCATGGATACACAGGCTGCGCTAGCAGAAGAAGGGATCCATGTTCGTGTTGTATCAATGCCATCACAAAATAT
CTTTGATGCGCAAAGCGACGCTTATAAAGAAGAGATTTTACCAGCCACAATCACAAAACGCTTGGCAATTGAAGCAGCAT
CAAGCTTTGGTTGGGCAAAATATGTAGGCTTAGCTGGCAAAACCTTAACCATTGACACATGGGGAGCTTCGGCACCAGGA
AATCGTATCTTTGAAGAATATGGTTTCACAACAGAAAATGCTACAGTCCTATATAAAGCATTATAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(550-652)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(355-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.127

100

0.561