Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LG291_RS19465 Genome accession   NZ_CP084990
Coordinates   3817913..3820339 (-) Length   808 a.a.
NCBI ID   WP_394580061.1    Uniprot ID   -
Organism   Cytobacillus firmus strain WLG-456     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3812913..3825339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG291_RS19440 (LG291_19275) - 3815490..3816578 (-) 1089 WP_404355596.1 AI-2E family transporter -
  LG291_RS19445 (LG291_19280) - 3816701..3816835 (-) 135 WP_081757307.1 YrzQ family protein -
  LG291_RS19450 (LG291_19285) - 3816861..3817052 (-) 192 WP_035331236.1 hypothetical protein -
  LG291_RS19455 (LG291_19290) - 3817068..3817538 (-) 471 WP_163143571.1 PRC-barrel domain-containing protein -
  LG291_RS19460 (LG291_19295) - 3817660..3817815 (-) 156 WP_404355599.1 hypothetical protein -
  LG291_RS19465 (LG291_19300) recD2 3817913..3820339 (-) 2427 WP_394580061.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LG291_RS19470 (LG291_19305) - 3820366..3821031 (-) 666 WP_404355601.1 tetratricopeptide repeat protein -
  LG291_RS19475 (LG291_19310) mnmA 3821148..3822263 (-) 1116 WP_404355603.1 tRNA 2-thiouridine(34) synthase MnmA -
  LG291_RS19480 (LG291_19315) - 3822323..3823465 (-) 1143 WP_394580067.1 cysteine desulfurase family protein -
  LG291_RS19485 (LG291_19320) cymR 3823533..3823952 (-) 420 WP_009333072.1 cysteine metabolism transcriptional regulator CymR -
  LG291_RS19490 (LG291_19325) - 3823952..3824638 (-) 687 WP_404355605.1 YitT family protein -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 91333.40 Da        Isoelectric Point: 4.9419

>NTDB_id=614223 LG291_RS19465 WP_394580061.1 3817913..3820339(-) (recD2) [Cytobacillus firmus strain WLG-456]
MEKQDSMDLFAEQGKFIKGRHLVTIFHNEQNLYTVVRIRVDETNDSYDEKEAVITGYLPKMHEHETYIFYGEFKDHPKFG
IQFHASHYRKDLPQTKQGVANYLSSELFKGIGKKTAEQIVETLGEDAITRILNQPSLLDNVPKLSPEKAKLLYDTLMEHQ
GLEQAMIALNQYGFGPQLSMRIYQVYKEMTIEVVQNNPYKLVEDIDGVGFGRADELGYQIGISGNHPDRIKAACLYILET
ESMQAGHVYIEAKPLLQSVKKLLEENKRDLIEYKDISNELIKLEEEGKIMAEGQKIFLPSLYFSEKGLVTNIKRILKQTQ
YDEQFPESEFLLALGNLEERLGVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLELKDYKKEE
PFPFLLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFDRHEESPLEGRILIVDETSMVDVWLANQLFKALPENMQVI
LVGDEDQLPSVGPGQVLKDLLRSERIPTVRLTDIYRQAEGSSIIELAHEMKKGKLPANITAQQSDRSFIKCQPGQIADVV
EKVVLNAKKKGYSSKDIQVLAPMYRGPAGIDRLNEILQEILNPNPDGSRKELSFGDVKYRIGDKVLQLVNQPENNVFNGD
MGEIVSIFYAKENTEKQDMIVVSFDGAEATYTRQDLNQITHAYCCSVHKSQGSEFPIVIMPVVKSYYRMLRRNLLYTAIT
RSRQFLILCGEEDALKMGVERADEQARLTTLSEKLRDAILSNDETGLEDTAETSFMETFSLEEKLLQADPMIGMGNITPY
DFLEKEYS

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=614223 LG291_RS19465 WP_394580061.1 3817913..3820339(-) (recD2) [Cytobacillus firmus strain WLG-456]
ATGGAAAAACAGGATTCCATGGATCTTTTTGCCGAACAGGGGAAGTTCATAAAGGGCAGACATCTGGTCACAATCTTTCA
TAATGAGCAAAACTTATATACGGTTGTGCGCATTAGGGTTGATGAAACGAATGACTCTTATGATGAAAAAGAAGCGGTCA
TTACCGGCTATCTTCCAAAGATGCATGAGCATGAAACCTATATTTTTTATGGTGAATTCAAAGACCACCCTAAGTTCGGC
ATCCAATTCCATGCAAGCCATTACAGGAAAGATCTTCCCCAGACGAAACAAGGCGTAGCCAATTATTTATCAAGTGAATT
ATTTAAAGGGATTGGCAAGAAAACAGCCGAGCAAATCGTGGAGACACTTGGAGAAGATGCGATTACTCGCATTCTAAACC
AGCCGTCCCTCCTTGATAATGTTCCCAAGCTGTCACCTGAAAAAGCTAAATTGCTTTACGATACGCTGATGGAACACCAG
GGCCTTGAGCAAGCCATGATTGCTCTTAATCAATATGGGTTTGGACCGCAGCTTTCCATGAGAATTTATCAGGTTTATAA
AGAAATGACGATTGAAGTCGTTCAAAATAACCCTTATAAGCTGGTTGAGGATATAGACGGGGTCGGCTTTGGCCGTGCTG
ACGAGCTGGGATATCAAATTGGCATATCAGGCAATCATCCTGACCGTATTAAAGCTGCCTGCCTCTACATACTTGAAACG
GAGAGTATGCAGGCAGGCCATGTTTATATTGAAGCAAAGCCTCTTCTGCAAAGTGTGAAGAAGCTGCTGGAAGAAAATAA
ACGTGATTTGATTGAATACAAGGATATATCCAATGAACTGATTAAGCTTGAAGAGGAAGGCAAGATCATGGCTGAAGGCC
AGAAAATTTTCCTTCCATCTCTTTATTTTTCCGAAAAAGGACTAGTAACCAATATTAAGCGGATCCTCAAGCAAACCCAG
TATGATGAACAGTTTCCGGAGTCGGAATTTCTTTTGGCCCTTGGAAATTTGGAGGAGCGCCTGGGTGTCCAATATGCCCC
AACTCAAAAGGAAGCCATTCAAACAGCTCTTATGTCTCCTATGCTGATATTGACCGGCGGACCGGGGACAGGAAAAACAA
CCGTTATTAAGGGGATTGTTGAGTTATATGCCGAGCTGCATGGCTGCTCCCTGGAACTGAAAGATTATAAAAAGGAAGAG
CCCTTTCCCTTCCTGCTGGCAGCCCCTACAGGAAGGGCTGCAAAACGGATGGCAGAATCAACTGGGCTGCCAGCTGTAAC
GATTCACCGTCTTCTTGGATGGAATGGATCTGAAGGATTTGACCGGCACGAGGAGAGTCCGCTGGAAGGCAGGATTTTAA
TTGTAGATGAAACATCAATGGTTGATGTTTGGCTTGCAAATCAGCTTTTCAAGGCTCTTCCTGAAAATATGCAAGTGATA
CTGGTTGGTGATGAAGACCAGCTGCCTTCAGTGGGTCCCGGCCAGGTTTTGAAGGATCTTCTGCGCTCAGAACGCATTCC
AACTGTCCGTTTAACAGATATTTACAGGCAGGCTGAAGGGTCTTCAATTATTGAACTGGCACATGAAATGAAAAAAGGCA
AGCTTCCTGCGAACATCACTGCCCAGCAATCGGACCGTTCATTTATTAAATGCCAGCCGGGCCAAATTGCTGATGTTGTT
GAGAAGGTTGTCCTTAATGCCAAAAAGAAAGGTTATTCATCTAAAGATATTCAGGTGCTGGCCCCAATGTACCGCGGACC
TGCAGGCATCGACAGACTAAACGAAATACTGCAGGAAATACTGAATCCAAATCCCGATGGATCGAGGAAAGAGCTGTCCT
TTGGTGATGTGAAATACAGAATTGGCGATAAGGTCCTTCAGCTTGTCAACCAGCCTGAGAACAATGTTTTTAACGGGGAT
ATGGGTGAGATTGTTTCTATTTTTTACGCAAAGGAAAATACGGAAAAACAGGATATGATTGTCGTATCCTTTGATGGTGC
GGAAGCTACATACACAAGACAGGATTTGAACCAGATCACTCATGCCTACTGCTGTTCTGTCCATAAATCGCAGGGAAGTG
AATTTCCGATTGTCATTATGCCTGTTGTTAAAAGCTATTACAGGATGCTGAGAAGGAATCTCCTTTATACCGCGATTACC
CGCAGCAGACAATTTTTGATATTGTGCGGCGAAGAAGATGCATTAAAAATGGGTGTGGAACGTGCGGATGAACAGGCCCG
CTTGACCACGCTTTCTGAAAAGCTGAGAGATGCAATCCTGTCTAATGATGAAACAGGGCTTGAAGATACAGCTGAGACTT
CTTTTATGGAAACATTTTCTCTCGAAGAAAAGCTTCTCCAAGCCGATCCAATGATAGGAATGGGAAATATAACACCGTAT
GATTTTTTGGAAAAAGAATATAGCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-552)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.731

98.639

0.609