Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   LG653_RS01130 Genome accession   NZ_CP084921
Coordinates   216270..217049 (-) Length   259 a.a.
NCBI ID   WP_005804531.1    Uniprot ID   -
Organism   Acinetobacter pittii strain CEP14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 211270..222049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG653_RS01110 (LG653_01110) aroB 211811..212893 (-) 1083 WP_005804533.1 3-dehydroquinate synthase -
  LG653_RS01115 (LG653_01115) aroK 212922..213491 (-) 570 WP_002116987.1 shikimate kinase AroK -
  LG653_RS01120 (LG653_01120) pilQ 213503..215668 (-) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  LG653_RS01125 (LG653_01125) pilP 215731..216258 (-) 528 WP_005804532.1 pilus assembly protein PilP Machinery gene
  LG653_RS01130 (LG653_01130) pilO 216270..217049 (-) 780 WP_005804531.1 type 4a pilus biogenesis protein PilO Machinery gene
  LG653_RS01135 (LG653_01135) pilN 217046..217687 (-) 642 WP_005804530.1 PilN domain-containing protein Machinery gene
  LG653_RS01140 (LG653_01140) pilM 217687..218745 (-) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  LG653_RS01145 (LG653_01145) ponA 218907..221468 (+) 2562 WP_005804528.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29431.54 Da        Isoelectric Point: 5.7456

>NTDB_id=614071 LG653_RS01130 WP_005804531.1 216270..217049(-) (pilO) [Acinetobacter pittii strain CEP14]
MSPDELHELSLEQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTIHDFIVEAAPVKDGKSDIPVLNYSIKAKTYRYMGAVENQNNSDPQVINGESQI
NASDSRNVHIPSIKKSKRK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=614071 LG653_RS01130 WP_005804531.1 216270..217049(-) (pilO) [Acinetobacter pittii strain CEP14]
ATGAGTCCTGATGAACTTCATGAGCTGTCTTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACCTTAGAAAAATTTCT
TCAGCAATTTAACACGCTCGATATGAACAGTTATGGCAGCTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTATTGGCTTTAGGGTATTTTGTTGCTATTCAACCAAAGCTACAAGCAATTGATAATGCTCAAGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTGCAGCAATACCAGCTTCAACTTCAAGAGAT
GCAAGCCAACTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAAGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCGGCATTACCACGTATTGTGAC
GATACATGATTTTATTGTTGAGGCTGCTCCTGTTAAGGATGGTAAATCAGATATTCCTGTGCTTAATTATTCTATCAAAG
CAAAAACTTATCGCTATATGGGTGCGGTTGAAAACCAAAATAATAGTGATCCTCAAGTGATAAATGGTGAAAGTCAGATA
AACGCCTCCGATAGCCGTAATGTACATATTCCTTCTATAAAGAAGTCAAAGCGAAAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

89.286

86.486

0.772
  comO Acinetobacter baylyi ADP1

71.674

89.961

0.645