Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   NPS16_RS08615 Genome accession   NZ_CP101986
Coordinates   1822310..1824673 (+) Length   787 a.a.
NCBI ID   WP_258968985.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1817310..1829673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS16_RS08590 (NPS16_08590) - 1818513..1819259 (-) 747 WP_024782615.1 CPBP family intramembrane glutamic endopeptidase -
  NPS16_RS08595 (NPS16_08595) - 1819663..1820208 (-) 546 WP_002263361.1 CvpA family protein -
  NPS16_RS08600 (NPS16_08600) - 1820205..1820510 (-) 306 WP_002263360.1 hypothetical protein -
  NPS16_RS08605 (NPS16_08605) rnhC 1820706..1821617 (+) 912 WP_002264187.1 ribonuclease HIII -
  NPS16_RS08610 (NPS16_08610) lepB 1821637..1822224 (+) 588 WP_002263358.1 signal peptidase I -
  NPS16_RS08615 (NPS16_08615) recD/recD2/recDB 1822310..1824673 (+) 2364 WP_258968985.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NPS16_RS08620 (NPS16_08620) - 1824772..1825242 (+) 471 WP_002301083.1 hypothetical protein -
  NPS16_RS08625 (NPS16_08625) - 1826119..1827111 (+) 993 WP_258968986.1 PTS sugar transporter subunit IIB -
  NPS16_RS08630 (NPS16_08630) - 1827226..1828041 (+) 816 WP_258968987.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  NPS16_RS08635 (NPS16_08635) - 1828057..1828977 (+) 921 WP_002264182.1 PTS system mannose/fructose/sorbose family transporter subunit IID -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88862.23 Da        Isoelectric Point: 5.5794

>NTDB_id=613888 NPS16_RS08615 WP_258968985.1 1822310..1824673(+) (recD/recD2/recDB) [Streptococcus mutans strain COCC33-14]
MTYYFSGTIDRVIFENTSNFFKIILLEIDDTDSDFDDFEIIVTGTIADVIEGENYTFWGELTQHPKYGQQLKVERYQRAK
PSSAGLIKYFSSQHFKGIGKKTAEKIIHLYGDDPIDNILEDPDKLESISGLSKANRENLVSKLRLNYGAEQILAKLAEYG
LNNKTAVQIFERYKEESLTVITENPYQLVEDIQGIGFKMADKLAEQVGINSDAPQRFRAALVHTLLETSIDKGDTYIEAK
ELLEKSLFILEEVRQVELDPSQIAQELTQLISEDKVQNIGTKIFDNTLFYAESGIHKHLTRILDRPLEKEISSQDIQTEI
KHIQAEFNINYDKAQKNAIQKAIQSKVFLLTGGPGTGKTTVINGIIKAYANLHQIDLQKSDRPIILAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDSEYQALDDFLDCDLIIIDEFSMVDTWLANQLFSAIASNTQIVIVGDSDQLSSVGPGQVLADLL
KINRLPQVSLTKIFRQSEDSTIVTLANQIRQGRLPTDFTAKKADRSYFEAQSTHIPQMIQKIVSSALKSGIDAQEIQILA
PMYRGQAGITHLNKLMQDLLNPLNNQLEFQFNDLHFRKGDKVLHLINDAQINVFNGDIGYITDLIPAKYTESKQDEMILD
FDGTEINYPRNEWLKITLAYAMSIHKSQGSEFKVVILPVTRQSGRLLQRNLIYTAITRSKSKLVMLGEIAAFDNAIKNEG
TKRKTYLIERFKKDECSGHHNTEKNKQGVKESAAILKEDFILTERNILTIDPMIGLSQADIDLFFKK

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=613888 NPS16_RS08615 WP_258968985.1 1822310..1824673(+) (recD/recD2/recDB) [Streptococcus mutans strain COCC33-14]
ATGACCTATTACTTTTCAGGCACCATTGACCGTGTTATTTTTGAAAATACCAGCAATTTTTTTAAAATTATTCTTCTGGA
AATTGACGATACTGACAGCGATTTTGATGATTTTGAAATTATTGTGACAGGTACTATTGCTGATGTTATTGAAGGAGAAA
ACTATACTTTTTGGGGTGAATTGACCCAGCATCCTAAATATGGACAGCAGTTAAAAGTGGAAAGATACCAGCGTGCTAAA
CCCTCTTCTGCTGGTCTGATTAAGTATTTTTCCAGTCAGCATTTCAAGGGAATCGGGAAAAAAACAGCCGAAAAAATTAT
TCACTTATATGGTGATGACCCTATTGATAATATTCTGGAAGATCCTGATAAGTTAGAAAGCATTAGTGGACTTTCTAAGG
CTAATAGAGAAAATTTAGTTAGTAAACTTCGTCTTAACTACGGTGCTGAACAGATTCTGGCAAAATTAGCAGAATATGGA
TTAAATAACAAAACAGCTGTTCAAATTTTTGAACGCTATAAAGAAGAAAGTTTGACTGTTATTACTGAAAATCCTTATCA
ACTGGTTGAGGACATTCAAGGCATTGGATTCAAAATGGCTGACAAATTAGCAGAACAAGTAGGTATTAACAGCGATGCTC
CTCAGCGTTTTCGTGCTGCTCTTGTTCATACTCTTTTAGAAACCTCTATTGACAAAGGTGACACCTATATTGAAGCCAAA
GAATTACTCGAAAAATCTCTTTTTATTCTTGAAGAAGTGAGACAAGTCGAACTGGATCCCAGTCAAATTGCTCAGGAACT
GACACAATTAATCTCCGAAGATAAGGTACAAAATATTGGTACTAAAATCTTTGATAATACGCTTTTTTATGCCGAATCAG
GCATTCATAAGCATCTTACCCGCATTCTGGATAGACCACTTGAAAAAGAGATCAGCAGCCAAGACATTCAAACTGAAATT
AAACATATTCAAGCAGAATTTAATATTAACTATGACAAAGCACAAAAAAATGCTATCCAAAAAGCCATCCAAAGCAAGGT
TTTCCTTTTAACAGGCGGTCCAGGAACCGGAAAAACGACTGTCATCAATGGAATTATTAAGGCTTATGCTAATTTGCATC
AAATTGACCTGCAAAAAAGTGACCGACCTATTATTCTGGCTGCCCCGACTGGTCGTGCTGCTAGACGGATGAATGAGCTA
ACAGGTTTACCTAGTGCCACCATTCACCGGCATTTAGGACTTAATGGTGATAGTGAATATCAGGCACTTGATGATTTTCT
GGATTGTGATCTCATTATTATTGACGAGTTTTCTATGGTTGATACTTGGCTAGCCAATCAATTGTTTAGTGCTATTGCTT
CAAATACACAAATTGTTATTGTTGGTGATAGCGATCAGCTCTCATCCGTCGGTCCAGGTCAAGTTTTGGCTGATTTACTG
AAAATAAATAGATTACCGCAAGTTTCCTTAACTAAAATATTCAGGCAATCTGAGGACTCAACCATTGTTACACTTGCTAA
CCAGATTCGCCAAGGTCGTCTACCAACTGATTTCACAGCTAAAAAGGCCGACCGTTCTTATTTTGAAGCGCAGAGCACTC
ACATTCCGCAAATGATTCAAAAGATTGTCAGTTCTGCCCTTAAAAGTGGTATAGATGCTCAGGAAATACAGATTTTAGCA
CCGATGTATCGTGGGCAAGCAGGTATTACGCATCTTAATAAACTGATGCAAGATTTGCTCAATCCTTTAAATAACCAGTT
AGAATTTCAATTTAATGACCTTCATTTTCGTAAGGGCGATAAAGTACTTCATCTTATCAACGATGCGCAAATTAACGTGT
TTAATGGTGACATTGGGTACATTACTGATCTTATTCCTGCAAAATATACAGAGTCCAAACAAGATGAAATGATTCTGGAT
TTTGATGGAACTGAGATTAACTATCCTCGCAATGAATGGTTGAAAATAACACTCGCTTACGCTATGAGTATCCACAAATC
TCAAGGCAGTGAATTTAAAGTAGTTATTCTTCCTGTCACACGCCAAAGCGGCAGACTTTTGCAACGCAATCTCATTTATA
CAGCTATCACACGCTCAAAAAGCAAACTTGTCATGTTGGGAGAAATTGCAGCCTTTGACAACGCCATCAAAAATGAAGGA
ACTAAAAGAAAAACTTATCTTATTGAACGCTTTAAGAAGGATGAATGCAGTGGCCACCATAACACCGAGAAAAATAAACA
AGGAGTAAAAGAAAGTGCAGCTATATTAAAAGAAGATTTTATTTTGACAGAAAGAAATATCTTAACGATTGACCCTATGA
TTGGCTTATCTCAAGCTGACATTGACTTATTTTTTAAGAAATAA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

AAA domain (AAA_30)

(331-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

43.011

94.536

0.407