Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LGM19_RS13020 Genome accession   NZ_CP084823
Coordinates   2728264..2728860 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain T69     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2723264..2733860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGM19_RS13000 (LGM19_13000) - 2723459..2725210 (-) 1752 WP_032458720.1 AAA family ATPase -
  LGM19_RS13005 (LGM19_13005) matP 2725396..2725848 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LGM19_RS13010 (LGM19_13010) ompA 2725982..2727052 (-) 1071 WP_002898408.1 porin OmpA -
  LGM19_RS13015 (LGM19_13015) sulA 2727406..2727915 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  LGM19_RS13020 (LGM19_13020) sxy/tfoX 2728264..2728860 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  LGM19_RS13025 (LGM19_13025) yccS 2728874..2731009 (-) 2136 WP_002898422.1 YccS family putative transporter -
  LGM19_RS13030 (LGM19_13030) - 2731027..2731473 (-) 447 WP_004224032.1 YccF domain-containing protein -
  LGM19_RS13035 (LGM19_13035) helD 2731598..2733652 (+) 2055 WP_004224033.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=613354 LGM19_RS13020 WP_004179217.1 2728264..2728860(+) (sxy/tfoX) [Klebsiella pneumoniae strain T69]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=613354 LGM19_RS13020 WP_004179217.1 2728264..2728860(+) (sxy/tfoX) [Klebsiella pneumoniae strain T69]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51