Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   NP436_RS06330 Genome accession   NZ_CP101932
Coordinates   1220875..1221792 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis subsp. natto strain BGSC 27E1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1215875..1226792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP436_RS06315 (NP436_06315) trpS 1216449..1217441 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  NP436_RS06320 (NP436_06320) oppA 1218185..1219828 (+) 1644 WP_131121718.1 oligopeptide ABC transporter substrate-binding protein OppA -
  NP436_RS06325 (NP436_06325) oppB 1219936..1220871 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  NP436_RS06330 (NP436_06330) amiD 1220875..1221792 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  NP436_RS06335 (NP436_06335) oppD 1221797..1222873 (+) 1077 WP_072173823.1 oligopeptide ABC transporter ATP-binding protein OppD -
  NP436_RS06340 (NP436_06340) oppF 1222875..1223792 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  NP436_RS06345 (NP436_06345) yjbB 1223900..1225117 (+) 1218 WP_072592593.1 MFS transporter -
  NP436_RS06350 (NP436_06350) yjbC 1225281..1225859 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  NP436_RS06355 (NP436_06355) spx 1226040..1226435 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=613157 NP436_RS06330 WP_003232954.1 1220875..1221792(+) (amiD) [Bacillus subtilis subsp. natto strain BGSC 27E1]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=613157 NP436_RS06330 WP_003232954.1 1220875..1221792(+) (amiD) [Bacillus subtilis subsp. natto strain BGSC 27E1]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATTATTATCGTGCTCATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCCCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGGCGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364