Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   NP432_RS06200 Genome accession   NZ_CP101931
Coordinates   1192876..1193793 (+) Length   305 a.a.
NCBI ID   WP_015252359.1    Uniprot ID   -
Organism   Bacillus subtilis strain BGSC b98af     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1187876..1198793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP432_RS06185 (NP432_06185) trpS 1188457..1189449 (-) 993 WP_015483084.1 tryptophan--tRNA ligase -
  NP432_RS06190 (NP432_06190) oppA 1190192..1191829 (+) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  NP432_RS06195 (NP432_06195) oppB 1191937..1192872 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  NP432_RS06200 (NP432_06200) amiD 1192876..1193793 (+) 918 WP_015252359.1 oligopeptide ABC transporter permease OppC Regulator
  NP432_RS06205 (NP432_06205) oppD 1193798..1194874 (+) 1077 WP_072173823.1 oligopeptide ABC transporter ATP-binding protein OppD -
  NP432_RS06210 (NP432_06210) oppF 1194876..1195793 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  NP432_RS06215 (NP432_06215) yjbB 1195899..1197116 (+) 1218 WP_224588911.1 MFS transporter -
  NP432_RS06220 (NP432_06220) yjbC 1197280..1197858 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  NP432_RS06225 (NP432_06225) spx 1198039..1198434 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33635.15 Da        Isoelectric Point: 10.2873

>NTDB_id=613008 NP432_RS06200 WP_015252359.1 1192876..1193793(+) (amiD) [Bacillus subtilis strain BGSC b98af]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAILDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=613008 NP432_RS06200 WP_015252359.1 1192876..1193793(+) (amiD) [Bacillus subtilis strain BGSC b98af]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGAGACATTTTCGTCCGTACATGGGTAGGGGCTCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTATTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCGATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364