Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LGV34_RS05340 Genome accession   NZ_CP084719
Coordinates   1091976..1094357 (+) Length   793 a.a.
NCBI ID   WP_103159035.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain 76ME     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1086976..1099357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGV34_RS05315 (LGV34_05310) - 1087586..1087741 (+) 156 WP_165806095.1 hypothetical protein -
  LGV34_RS05320 (LGV34_05315) - 1087786..1088799 (-) 1014 WP_107366196.1 LLM class flavin-dependent oxidoreductase -
  LGV34_RS05325 (LGV34_05320) - 1089019..1090167 (+) 1149 WP_103159038.1 cysteine desulfurase family protein -
  LGV34_RS05330 (LGV34_05325) mnmA 1090164..1091276 (+) 1113 WP_268217103.1 tRNA 2-thiouridine(34) synthase MnmA -
  LGV34_RS05335 (LGV34_05330) - 1091299..1091973 (+) 675 WP_103159036.1 tetratricopeptide repeat protein -
  LGV34_RS05340 (LGV34_05335) recD2 1091976..1094357 (+) 2382 WP_103159035.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LGV34_RS05345 (LGV34_05340) alaS 1094583..1097213 (+) 2631 WP_103159034.1 alanine--tRNA ligase -
  LGV34_RS05350 (LGV34_05345) - 1097275..1097547 (+) 273 WP_037574156.1 IreB family regulatory phosphoprotein -
  LGV34_RS05355 (LGV34_05350) ruvX 1097540..1097968 (+) 429 WP_037574153.1 Holliday junction resolvase RuvX -
  LGV34_RS05360 (LGV34_05355) - 1097983..1098297 (+) 315 WP_037574148.1 DUF1292 domain-containing protein -
  LGV34_RS05365 (LGV34_05360) - 1098678..1099322 (+) 645 WP_037574145.1 O-methyltransferase -

Sequence

Protein


Download         Length: 793 a.a.        Molecular weight: 89544.73 Da        Isoelectric Point: 4.6485

>NTDB_id=612732 LGV34_RS05340 WP_103159035.1 1091976..1094357(+) (recD2) [Staphylococcus chromogenes strain 76ME]
MENPTLFEQSYVKGNIDVILFQNNDNYYTVLKVEVEDSNEDFDTTATIVGFFPNIVEGETYTFKGQITDHPKYGKQLKAE
TFQKVLPQTREAVIQYLSSGLFKGVGKKTAESIVDTLGENAIQSILKDASVLEKVPKLSKTKQSQIADQVFQNQESEQIM
VRLNELGFGAKLAMDIYKFYKSDTLDILNQNPYQLVYDIRGVGFQKADQLANQMGISEHHPNRLKAGIQFVVEDTCIKQG
HTYLPKETLVTESLQLLSKNSQVPIDTTLIEEVLTQLVEENRLVDDHENIAIPSLYYSELKSAQNIYKMMQQQLHLEVFD
QSDIQMHIGEIEQTNSVSYAEAQKEALEAAMKHQIMILTGGPGTGKTTVIKGIVYLYAALHGISLDYDDYTEEDYPIVLA
APTGRASKRLHDATGLEAMTIHRLIGWNQETKPEDILDNEISAKLIIIDEMSMVDTWLFHQFMAAVPNDAQVVLVGDEDQ
LPSVGPGQVFKDLIASKTLPRINLTEVYRQQDGSSIIALAHRMKSGQSVDITERFHDRSFIPCHVDQIPEVVRKVVTNAV
SKGYDMSDIQVLAPMYRGNAGIHRLNKVLQEILNPLDTSEQREIQFGDVLFRKGDKVLQLVNRPNDNVFNGDIGVIVGIF
WAKENALNKDVVVVDYEGNEITYLKSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYYRMLQKPILYTGLTRAKQSLVF
LGDADAFNLGLKTEGQVRLTREKSFLEQYFSTEEVQNENVELTEATMFQINPMINMENVTPYDFLEIDNAEKA

Nucleotide


Download         Length: 2382 bp        

>NTDB_id=612732 LGV34_RS05340 WP_103159035.1 1091976..1094357(+) (recD2) [Staphylococcus chromogenes strain 76ME]
GTGGAAAACCCAACACTATTTGAGCAGTCGTATGTTAAAGGGAATATTGATGTCATTTTATTTCAAAATAACGACAATTA
TTACACAGTGCTCAAAGTTGAAGTTGAGGATTCTAATGAGGACTTTGATACGACGGCGACGATAGTTGGGTTTTTTCCAA
ATATTGTTGAAGGTGAAACTTATACGTTCAAGGGGCAAATCACTGATCACCCTAAGTATGGGAAACAACTAAAAGCTGAA
ACGTTCCAGAAAGTGCTTCCGCAAACGAGAGAAGCGGTAATTCAATATTTATCAAGTGGGCTTTTCAAGGGCGTTGGTAA
AAAAACTGCAGAATCCATTGTAGATACGTTAGGTGAAAATGCAATTCAGTCGATTCTTAAAGATGCATCTGTTCTTGAAA
AGGTGCCCAAATTGTCAAAAACAAAGCAATCGCAAATCGCAGACCAAGTTTTTCAAAATCAAGAAAGCGAACAAATTATG
GTGCGTCTGAATGAATTAGGGTTTGGTGCAAAACTTGCGATGGATATTTACAAGTTTTATAAAAGTGATACTTTAGACAT
TCTCAATCAAAATCCCTACCAACTTGTTTATGATATACGAGGCGTGGGCTTTCAAAAAGCAGACCAATTGGCAAATCAAA
TGGGCATTTCAGAACATCACCCCAATCGCTTAAAAGCAGGCATTCAATTTGTCGTTGAAGACACCTGTATTAAACAGGGA
CACACGTACTTGCCTAAGGAAACTTTAGTGACTGAGTCATTGCAACTTCTTTCAAAAAATAGTCAGGTGCCTATTGACAC
CACTTTAATTGAAGAAGTGTTAACTCAACTTGTAGAAGAAAACCGTCTCGTTGATGATCACGAAAATATTGCAATTCCTA
GCCTTTATTATTCAGAATTAAAGAGTGCTCAAAATATTTATAAAATGATGCAACAACAACTACACCTCGAAGTGTTTGAT
CAATCGGATATTCAGATGCATATTGGTGAAATCGAGCAAACAAATAGTGTGTCATATGCCGAGGCACAAAAAGAGGCGTT
AGAAGCCGCTATGAAGCATCAAATAATGATTTTGACAGGTGGGCCTGGTACAGGTAAAACCACTGTAATAAAAGGGATTG
TTTATCTGTATGCTGCTTTACACGGGATTTCTTTAGATTACGATGACTATACCGAAGAAGATTATCCTATTGTTTTAGCA
GCACCGACGGGTCGGGCTTCGAAACGACTACACGATGCGACTGGCTTGGAGGCTATGACCATTCACCGTCTAATTGGTTG
GAATCAAGAAACCAAACCTGAAGATATATTGGATAATGAAATTTCTGCCAAACTTATTATTATAGATGAAATGTCAATGG
TCGATACTTGGTTGTTTCACCAATTTATGGCAGCAGTTCCTAATGATGCACAAGTTGTTTTGGTAGGTGATGAAGATCAA
CTCCCATCTGTTGGGCCTGGGCAAGTGTTTAAAGATTTAATTGCCTCAAAAACACTCCCACGTATCAATTTAACAGAAGT
TTATCGTCAGCAGGATGGTTCAAGTATCATTGCGCTTGCGCATCGTATGAAATCAGGTCAATCTGTTGATATTACTGAAC
GGTTTCATGATCGTTCATTCATCCCTTGTCATGTCGATCAAATACCAGAAGTGGTACGTAAAGTGGTAACAAATGCAGTT
TCAAAAGGCTATGATATGTCTGATATACAAGTATTAGCTCCGATGTACCGAGGAAATGCAGGGATTCATCGATTGAATAA
AGTGCTTCAAGAAATACTGAACCCTTTGGATACATCTGAGCAACGCGAAATTCAGTTTGGTGATGTCTTGTTTCGAAAAG
GCGATAAGGTATTACAACTTGTCAATCGTCCGAATGACAATGTATTTAATGGCGACATCGGAGTTATTGTAGGTATTTTT
TGGGCTAAGGAAAATGCGCTAAACAAAGACGTCGTTGTCGTGGACTATGAAGGCAATGAAATTACTTATTTAAAATCAGA
TTTAACCGAGTTGACACATGCCTATTGCACATCAATTCATAAAGCACAAGGTTCAGAATTCCCGATAGTCATTATGCCTA
TTGTCAAACAATATTATAGAATGTTGCAAAAACCCATTTTATATACGGGTCTCACACGTGCGAAGCAATCATTAGTGTTT
TTAGGAGACGCGGATGCATTTAATCTCGGATTAAAAACAGAAGGCCAAGTAAGATTAACTCGTGAAAAAAGCTTTTTAGA
ACAATACTTTTCTACAGAAGAAGTACAAAATGAAAATGTTGAACTTACAGAAGCCACTATGTTTCAAATTAATCCTATGA
TTAATATGGAGAATGTGACGCCTTACGATTTTTTAGAAATTGACAACGCTGAAAAGGCTTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

AAA domain (AAA_30)

(339-544)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.239

99.369

0.489