Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LG401_RS07680 Genome accession   NZ_CP084711
Coordinates   1540773..1541552 (+) Length   259 a.a.
NCBI ID   WP_012009951.1    Uniprot ID   A8FD81
Organism   Bacillus pumilus strain AR03     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535773..1546552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG401_RS07660 (LG401_07660) trmFO 1536477..1537781 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LG401_RS07665 (LG401_07665) xerC 1537844..1538761 (+) 918 WP_060596252.1 tyrosine recombinase XerC -
  LG401_RS07670 (LG401_07670) hslV 1538776..1539321 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  LG401_RS07675 (LG401_07675) hslU 1539338..1540738 (+) 1401 WP_226509450.1 HslU--HslV peptidase ATPase subunit -
  LG401_RS07680 (LG401_07680) codY 1540773..1541552 (+) 780 WP_012009951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LG401_RS07685 (LG401_07685) flgB 1541840..1542229 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  LG401_RS07690 (LG401_07690) flgC 1542229..1542681 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  LG401_RS07695 (LG401_07695) fliE 1542693..1543010 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  LG401_RS07700 (LG401_07700) fliF 1543060..1544652 (+) 1593 WP_060596256.1 flagellar basal-body MS-ring/collar protein FliF -
  LG401_RS07705 (LG401_07705) fliG 1544664..1545680 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  LG401_RS07710 (LG401_07710) fliH 1545673..1546437 (+) 765 WP_034662367.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29044.31 Da        Isoelectric Point: 4.6614

>NTDB_id=612622 LG401_RS07680 WP_012009951.1 1540773..1541552(+) (codY) [Bacillus pumilus strain AR03]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=612622 LG401_RS07680 WP_012009951.1 1540773..1541552(+) (codY) [Bacillus pumilus strain AR03]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACGTTGAGAGATGTCATTGATTCAAACATTTTCGTGTTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAACCTTGACATTAATAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTCGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGCACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCCGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTTGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATCGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FD81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.753

100

0.958
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471