Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LGQ02_RS12750 Genome accession   NZ_CP084703
Coordinates   2610690..2611466 (-) Length   258 a.a.
NCBI ID   WP_226514749.1    Uniprot ID   -
Organism   Bacillus shivajii strain JCM 32183     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2605690..2616466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGQ02_RS12725 (LGQ02_12725) fliG 2606118..2607128 (-) 1011 WP_226514745.1 flagellar motor switch protein FliG -
  LGQ02_RS12730 (LGQ02_12730) fliF 2607144..2608730 (-) 1587 WP_226514746.1 flagellar basal-body MS-ring/collar protein FliF -
  LGQ02_RS12735 (LGQ02_12735) fliE 2608967..2609275 (-) 309 WP_404802353.1 flagellar hook-basal body complex protein FliE -
  LGQ02_RS12740 (LGQ02_12740) flgC 2609297..2609749 (-) 453 WP_226514747.1 flagellar basal body rod protein FlgC -
  LGQ02_RS12745 (LGQ02_12745) flgB 2609756..2610157 (-) 402 WP_226514748.1 flagellar basal body rod protein FlgB -
  LGQ02_RS12750 (LGQ02_12750) codY 2610690..2611466 (-) 777 WP_226514749.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LGQ02_RS12755 (LGQ02_12755) hslU 2611478..2612881 (-) 1404 WP_226514750.1 ATP-dependent protease ATPase subunit HslU -
  LGQ02_RS12760 (LGQ02_12760) hslV 2612913..2613458 (-) 546 WP_226514751.1 ATP-dependent protease subunit HslV -
  LGQ02_RS12765 (LGQ02_12765) xerC 2613474..2614376 (-) 903 WP_404802354.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 28745.85 Da        Isoelectric Point: 4.5630

>NTDB_id=612545 LGQ02_RS12750 WP_226514749.1 2610690..2611466(-) (codY) [Bacillus shivajii strain JCM 32183]
MDLLSKTRKINELLQKSGGQSVNFKDVAVTLRDVIEANIFIVSRRGKLLGYSIKQEIENERMKQMLEARQFPEEYTSGLF
KIEETSPNLDINSEFTAFPVENKDLFSAGLTTVVPIQGGGQRLGTLILARLEDSFDDDDLLLAEYASTVVGMEILHEKTE
EIEQEARSKAVVQMAISSLSYSELEAVEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLVELDKVKN

Nucleotide


Download         Length: 777 bp        

>NTDB_id=612545 LGQ02_RS12750 WP_226514749.1 2610690..2611466(-) (codY) [Bacillus shivajii strain JCM 32183]
ATGGATCTATTATCGAAAACACGTAAAATTAATGAATTACTTCAAAAGAGCGGAGGACAATCAGTTAACTTTAAAGATGT
TGCAGTAACATTACGAGATGTGATTGAAGCAAATATCTTTATCGTAAGTCGCCGAGGTAAATTATTAGGCTATTCAATTA
AACAAGAAATTGAAAATGAGCGTATGAAACAAATGCTTGAGGCTCGTCAATTTCCAGAGGAGTACACAAGCGGTTTATTT
AAAATCGAAGAAACTAGTCCAAATCTAGATATTAATAGTGAGTTTACGGCATTTCCTGTAGAGAATAAAGATTTATTCTC
AGCAGGGCTAACAACAGTTGTACCGATTCAAGGTGGAGGTCAACGTTTAGGGACATTAATTCTAGCTCGTCTAGAAGATT
CATTTGATGATGATGATTTATTACTAGCTGAATATGCATCTACAGTAGTAGGGATGGAAATTTTACACGAGAAAACAGAA
GAAATTGAACAAGAAGCAAGAAGTAAAGCTGTCGTACAAATGGCAATTAGTTCATTATCTTATAGTGAATTAGAAGCTGT
AGAACATATCTTTGAAGAACTAGATGGAAATGAAGGTCTTCTAGTAGCAAGTAAAATTGCTGACCGCGTTGGTATTACGA
GATCAGTAATCGTAAATGCACTACGTAAGCTTGAGAGTGCAGGGGTTATCGAGTCTCGTTCACTTGGTATGAAAGGGACG
TATATTAAAGTATTAAACGACAAGTTCTTAGTAGAACTTGATAAAGTGAAGAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

80.62

100

0.806
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.178

95.736

0.461