Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LGQ02_RS06360 Genome accession   NZ_CP084703
Coordinates   1319044..1321326 (+) Length   760 a.a.
NCBI ID   WP_226517367.1    Uniprot ID   -
Organism   Bacillus shivajii strain JCM 32183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1314044..1326326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGQ02_RS06335 (LGQ02_06335) - 1314800..1315453 (+) 654 WP_226517362.1 YitT family protein -
  LGQ02_RS06340 (LGQ02_06340) cymR 1315437..1315856 (+) 420 WP_226517363.1 cysteine metabolism transcriptional regulator CymR -
  LGQ02_RS06345 (LGQ02_06345) - 1316031..1317170 (+) 1140 WP_226517364.1 cysteine desulfurase family protein -
  LGQ02_RS06350 (LGQ02_06350) mnmA 1317200..1318306 (+) 1107 WP_226517365.1 tRNA 2-thiouridine(34) synthase MnmA -
  LGQ02_RS06355 (LGQ02_06355) - 1318361..1319026 (+) 666 WP_226517366.1 tetratricopeptide repeat protein -
  LGQ02_RS06360 (LGQ02_06360) recD2 1319044..1321326 (+) 2283 WP_226517367.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LGQ02_RS06365 (LGQ02_06365) - 1321382..1321858 (+) 477 WP_226517368.1 PRC-barrel domain-containing protein -
  LGQ02_RS06370 (LGQ02_06370) - 1321878..1322063 (+) 186 WP_226517369.1 DUF2797 domain-containing protein -
  LGQ02_RS06375 (LGQ02_06375) - 1322091..1322282 (+) 192 WP_226517370.1 DUF3918 family protein -
  LGQ02_RS06380 (LGQ02_06380) - 1322467..1323543 (+) 1077 WP_226517371.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 760 a.a.        Molecular weight: 85822.70 Da        Isoelectric Point: 4.6343

>NTDB_id=612536 LGQ02_RS06360 WP_226517367.1 1319044..1321326(+) (recD2) [Bacillus shivajii strain JCM 32183]
MTEAAIHEEKDYIKGELLHQIYHNEDSLYTVAKLKVKKSSYEQIDSEITVVGTMPNLEKDITYLFYGYFKDHPRFGRQYQ
VEQFQKLLPETEQGIILYLSSDRFPGVGKKTAENIVDTLGKNAISVILQDREVLNKVANLKPEKADQIHQTLLEDQGIEQ
VLVKLYEYGFGLQLAIKVYQAYKMDALKVIETNPYQMIEDVQGIGFAKADVIGRKQGLTGNHPDRIRAAVLFLLYEHSLN
NGHVYVGNEQMIEDAKDLLEKESDVTISHLEIADQIIQLGEENKLVVEEKKMFMPSLYYAEQGIVTNIHRLLKEDQELEE
YPESEFLKALGDVEEELGITYAPSQKTAIQEALHSRVMILTGGPGTGKTTVIKGLIEVFSDLKGISVDPEDYDKKSPFPV
LMAAPTGRAAKRMTESTGLPASTIHRLLGYKGNEDEFEYDEYEQLEGDLLIIDEMSMVDTWLANQLFKAVPDHMQVIMVG
DEDQLPSVGPGQVFTDFLASKQIPSVKLTDIYRQSDGSKIIEFSHQIKEGALPGKIDGESKDLRFFPCDQPQVPEAVEKI
CKGAISRGFTAKEVQVLAPMYRGIAGVENLNDMLQKLFNPPSDQKREVPFGNVVYRSGDVVLQLVNNPEENVYNGDRGEI
VAIFTEKENTDGEIKIVISFDGIEVTYSKQDLTQITHAYCCSIHKSQGSEFPIVIMPVVKGYYRMLRKKLIYTGITRAKD
FLLLCGDWNALEMAVGNNNDVERNTTLRDKLNERGMEEEY

Nucleotide


Download         Length: 2283 bp        

>NTDB_id=612536 LGQ02_RS06360 WP_226517367.1 1319044..1321326(+) (recD2) [Bacillus shivajii strain JCM 32183]
ATGACAGAGGCCGCCATCCATGAAGAAAAAGATTATATAAAAGGAGAACTACTCCATCAAATTTATCATAATGAAGATTC
TCTCTATACCGTTGCTAAGTTGAAGGTAAAGAAGTCATCCTATGAACAGATCGATTCAGAGATTACCGTTGTTGGTACAA
TGCCAAACTTAGAAAAAGACATTACGTACCTTTTTTACGGCTATTTTAAAGACCATCCACGCTTTGGCAGACAATATCAA
GTCGAGCAGTTTCAAAAACTACTACCAGAAACCGAGCAAGGTATCATTCTTTATTTATCGAGTGATCGTTTTCCAGGCGT
GGGGAAAAAAACAGCCGAAAACATCGTTGATACACTAGGTAAAAATGCGATCTCAGTTATATTACAAGATCGTGAAGTAT
TAAATAAAGTGGCAAACTTAAAGCCTGAAAAAGCAGACCAAATCCATCAAACGTTATTAGAAGACCAAGGAATCGAACAA
GTCTTAGTGAAGCTTTATGAATATGGCTTTGGACTGCAACTAGCTATTAAAGTGTATCAAGCTTATAAGATGGATGCGTT
AAAAGTGATTGAAACAAACCCATATCAAATGATTGAAGACGTACAAGGAATCGGATTTGCAAAAGCAGATGTGATTGGGC
GAAAACAAGGATTAACAGGTAATCATCCAGACCGGATTCGCGCGGCGGTTCTTTTCTTACTTTATGAACATTCGCTTAAT
AATGGCCATGTTTATGTAGGAAATGAGCAAATGATTGAAGATGCGAAAGATTTATTAGAAAAAGAAAGTGATGTAACGAT
ATCTCACTTGGAAATCGCAGATCAAATCATTCAGTTAGGAGAAGAAAATAAACTCGTTGTAGAAGAGAAAAAAATGTTTA
TGCCTTCTCTTTATTATGCTGAACAAGGGATCGTTACAAACATTCATCGCCTTTTAAAAGAAGATCAGGAGCTTGAAGAG
TATCCAGAGTCAGAGTTTTTAAAAGCGTTAGGGGATGTTGAAGAAGAGCTTGGCATTACGTATGCTCCTTCTCAAAAAAC
AGCGATTCAAGAAGCCCTTCACTCTCGAGTCATGATTTTAACGGGTGGACCAGGAACGGGGAAGACAACGGTAATTAAAG
GATTGATTGAGGTATTCAGTGATTTAAAAGGAATCTCGGTTGATCCTGAAGACTATGATAAAAAATCCCCCTTTCCAGTT
TTAATGGCTGCGCCGACAGGTCGTGCAGCGAAGCGAATGACAGAATCAACTGGTCTACCAGCATCAACGATCCACCGTCT
TCTCGGTTATAAAGGTAATGAAGATGAGTTTGAATACGATGAGTACGAGCAGCTTGAAGGTGATCTTTTAATCATTGATG
AAATGTCGATGGTGGATACATGGCTTGCCAATCAACTTTTTAAAGCAGTACCAGATCATATGCAAGTCATTATGGTAGGG
GACGAAGATCAGCTTCCATCTGTTGGTCCAGGCCAAGTGTTTACCGACTTTTTAGCATCAAAGCAAATACCATCGGTAAA
ACTGACTGATATCTATCGACAATCAGATGGTTCAAAAATTATTGAGTTCTCTCACCAAATTAAAGAGGGTGCGTTACCTG
GAAAAATTGATGGAGAAAGTAAAGACCTTCGTTTTTTCCCATGTGACCAACCACAAGTGCCTGAAGCGGTTGAGAAAATT
TGTAAAGGAGCTATTTCTCGTGGATTTACCGCGAAAGAAGTTCAAGTATTAGCACCAATGTATCGTGGGATTGCAGGGGT
AGAAAACTTAAATGATATGCTACAGAAGCTGTTTAACCCTCCATCAGACCAAAAACGAGAGGTTCCATTTGGAAACGTTG
TATATCGTAGTGGCGATGTTGTCTTGCAACTTGTCAACAACCCTGAAGAAAATGTATATAATGGTGACCGTGGAGAAATT
GTTGCGATTTTTACAGAAAAGGAAAATACGGATGGCGAGATAAAAATTGTTATTTCCTTTGATGGTATTGAAGTGACCTA
TTCGAAGCAAGATTTAACACAAATTACTCATGCCTATTGTTGTTCGATCCATAAATCACAAGGTAGCGAATTCCCAATTG
TCATTATGCCAGTAGTAAAAGGATATTACCGGATGTTAAGAAAAAAATTAATTTATACGGGGATTACAAGGGCAAAAGAC
TTTTTACTTTTATGTGGAGATTGGAATGCACTTGAGATGGCGGTTGGAAATAACAATGATGTAGAACGAAATACAACGTT
GAGAGATAAATTAAATGAGCGGGGAATGGAAGAAGAATACTAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-725)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(590-649)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

AAA domain (AAA_30)

(341-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.351

98.289

0.534