Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LGQ02_RS06265 Genome accession   NZ_CP084703
Coordinates   1296661..1298997 (+) Length   778 a.a.
NCBI ID   WP_226517349.1    Uniprot ID   -
Organism   Bacillus shivajii strain JCM 32183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1291661..1303997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGQ02_RS06240 (LGQ02_06240) - 1292376..1292657 (+) 282 WP_226517344.1 post-transcriptional regulator -
  LGQ02_RS06245 (LGQ02_06245) secD 1292801..1294120 (+) 1320 WP_226517345.1 protein translocase subunit SecD -
  LGQ02_RS06250 (LGQ02_06250) secF 1294110..1295036 (+) 927 WP_226517346.1 protein translocase subunit SecF -
  LGQ02_RS06255 (LGQ02_06255) - 1295335..1296270 (+) 936 WP_226517347.1 cation diffusion facilitator family transporter -
  LGQ02_RS06260 (LGQ02_06260) - 1296267..1296593 (+) 327 WP_226517348.1 lipopolysaccharide assembly LapA domain-containing protein -
  LGQ02_RS06265 (LGQ02_06265) recJ 1296661..1298997 (+) 2337 WP_226517349.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LGQ02_RS06270 (LGQ02_06270) - 1299142..1299654 (+) 513 WP_226517350.1 adenine phosphoribosyltransferase -
  LGQ02_RS06275 (LGQ02_06275) - 1300053..1302233 (+) 2181 WP_226517351.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LGQ02_RS06280 (LGQ02_06280) dtd 1302249..1302689 (+) 441 WP_226517352.1 D-aminoacyl-tRNA deacylase -
  LGQ02_RS06285 (LGQ02_06285) - 1302802..1302978 (+) 177 WP_226517353.1 hypothetical protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 88289.66 Da        Isoelectric Point: 5.0462

>NTDB_id=612535 LGQ02_RS06265 WP_226517349.1 1296661..1298997(+) (recJ) [Bacillus shivajii strain JCM 32183]
MLQSNARWKINKPDEQLVKQLAEQLGVSMIAARFLIQRNFTKAEEANAFLHIDKNKLHDPFEMKDMEKGIDRMKRAIDNN
EKILIFGDYDADGVTSTSLMYLTLKQLGAQVGFYVPNRFTEGYGPNENAFRHAHEEGITLIITVDTGISAVHEANVAKDL
GMDLIITDHHEPPPEIPQGYAVINPKREDCPYPNKNLAGVGVAFKFAEALLGELPEQFLDLVALGTVADLVPLVDENRYF
VTKGVRNLSRNQRPGLKALMAQCGIEPEEMSEEQVGFMIGPRLNAAGRLDSADPAIHLLTSEDPYEAEEIALMIDDLNKE
RQKIVSDMTKEAEKQVEESGIPPVIIVGQEGWNAGVIGIVASRLVEKYYRPTIVLSLDSEKGLAKGSARSIEGFDMFQSL
SQCREWLPHFGGHPMAAGLTMEIEHVEPLHEKLIQIAEETLTEEDWIRSLHVDLPVQLHEVTIEAINDLKTMAPFGVGNP
APKILIEEVEIDTCKKIGAKQDHLKITFKKENQQLDGIGFRMGDKHDALSPLAKASVVGQLSINEWNGHSKPQIILEDMK
VDGWQLFDLRGDHQSIKTISHLPADEVTFVVFREKSMEAVHIDNNWDVYKVYSDETILNKSRKYIVLYDLPESIRDLENV
LESMQEPHRIYACFQHDESSFFETLPTREQFKWLYAFLRKRGSFDMKKHGADLAKHKNWSEKSIHFMCKVFFDLEFVKIN
NGLITVEEHPQKKDLVNSPTYQRRIEQSELENELLYSSYRSLKKQLEDAMNDKALSFA

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=612535 LGQ02_RS06265 WP_226517349.1 1296661..1298997(+) (recJ) [Bacillus shivajii strain JCM 32183]
ATGCTACAATCAAATGCACGATGGAAAATAAACAAACCAGATGAGCAACTCGTGAAACAATTAGCAGAACAACTAGGTGT
TTCTATGATTGCTGCTCGTTTTTTAATTCAGCGAAATTTTACAAAAGCAGAAGAAGCTAATGCTTTTTTACATATTGATA
AAAACAAGTTGCATGATCCGTTTGAAATGAAAGATATGGAAAAAGGCATTGACAGAATGAAAAGAGCAATCGATAACAAT
GAAAAAATCCTCATATTCGGTGATTATGATGCTGATGGCGTTACAAGTACGTCACTTATGTATTTAACGTTGAAACAATT
AGGAGCTCAAGTTGGCTTTTACGTTCCAAACCGATTTACTGAAGGATATGGACCGAATGAAAATGCATTTCGCCATGCAC
ATGAAGAAGGCATAACATTAATCATAACAGTTGATACAGGAATTTCAGCTGTTCATGAAGCCAATGTGGCAAAAGATTTA
GGGATGGATTTAATCATTACTGATCACCATGAGCCACCACCAGAAATACCACAAGGATATGCTGTTATTAATCCGAAACG
TGAAGACTGTCCTTATCCGAATAAAAATTTAGCAGGTGTAGGGGTCGCATTTAAGTTTGCTGAAGCGTTGTTAGGTGAAC
TTCCAGAACAATTTTTGGATTTGGTTGCCTTAGGTACCGTTGCGGACCTTGTCCCGTTAGTTGATGAAAATCGTTATTTT
GTAACGAAAGGGGTACGTAATCTATCTAGGAATCAGCGTCCTGGTTTAAAAGCATTAATGGCTCAGTGTGGCATTGAACC
AGAAGAAATGAGTGAAGAACAGGTCGGTTTTATGATCGGACCTCGATTAAATGCAGCTGGCCGTCTAGATTCGGCTGACC
CTGCCATTCACTTATTAACGAGTGAGGACCCTTATGAAGCTGAAGAAATCGCACTAATGATTGATGACTTGAATAAAGAA
CGGCAAAAAATTGTTAGCGATATGACAAAAGAAGCCGAAAAACAAGTTGAAGAAAGTGGGATTCCTCCAGTTATTATCGT
TGGACAAGAAGGTTGGAACGCAGGGGTTATCGGCATTGTTGCAAGTAGACTTGTCGAGAAGTATTACCGACCTACAATTG
TCCTTAGCCTTGACTCAGAAAAAGGACTAGCGAAAGGATCTGCACGTAGCATCGAAGGGTTTGATATGTTTCAATCTCTC
TCTCAATGTCGAGAGTGGCTCCCGCATTTTGGTGGACATCCAATGGCTGCAGGTCTTACGATGGAAATTGAGCATGTTGA
ACCGTTGCATGAAAAGTTGATTCAAATTGCAGAAGAAACGTTGACTGAAGAAGATTGGATTCGGTCACTTCATGTAGACT
TACCCGTTCAACTTCATGAAGTAACAATTGAAGCGATTAATGATTTAAAGACGATGGCACCTTTTGGGGTAGGAAACCCT
GCACCGAAGATCCTAATAGAGGAAGTTGAAATCGATACGTGTAAAAAAATCGGAGCCAAACAAGATCATCTAAAAATCAC
CTTTAAAAAAGAAAACCAACAATTGGATGGTATTGGCTTTAGAATGGGTGATAAACATGATGCTCTTTCCCCATTAGCAA
AAGCTTCAGTTGTAGGACAACTATCGATTAATGAATGGAATGGGCATAGTAAACCCCAAATTATTTTAGAAGATATGAAA
GTGGACGGGTGGCAACTATTCGATTTGCGTGGTGATCATCAATCCATAAAGACAATTAGTCACTTGCCAGCAGATGAAGT
AACGTTTGTCGTCTTTCGCGAAAAAAGTATGGAAGCTGTTCATATAGATAATAACTGGGATGTTTATAAAGTGTATTCGG
ACGAAACAATACTAAATAAGTCTAGAAAATACATCGTTCTATACGATTTACCGGAATCAATACGTGATTTAGAAAATGTA
CTTGAGTCAATGCAAGAACCTCACCGCATTTATGCATGTTTTCAGCATGATGAAAGTTCATTTTTTGAAACACTGCCAAC
TCGTGAACAATTTAAATGGCTTTATGCATTTTTGAGAAAACGAGGCTCGTTTGATATGAAAAAACATGGCGCTGACTTAG
CAAAGCATAAAAATTGGTCCGAAAAATCAATTCATTTTATGTGTAAGGTGTTTTTTGACTTGGAATTTGTTAAAATAAAC
AATGGACTTATTACCGTCGAAGAACATCCACAAAAAAAGGACTTAGTGAATTCGCCGACTTATCAAAGACGGATCGAACA
GAGCGAATTAGAAAACGAGCTACTTTACTCATCATATCGTTCTCTAAAAAAACAATTAGAAGATGCGATGAATGACAAAG
CATTGTCATTTGCGTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-435)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(565-764)

RecJ OB domain (RecJ_OB)

(452-558)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.113

100

0.523