Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LDB25_RS08465 Genome accession   NZ_CP084695
Coordinates   1665908..1666687 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain DJB5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1660908..1671687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB25_RS08445 (LDB25_08430) trmFO 1661595..1662902 (+) 1308 WP_014417766.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LDB25_RS08450 (LDB25_08435) xerC 1662972..1663889 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  LDB25_RS08455 (LDB25_08440) hslV 1663905..1664450 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  LDB25_RS08460 (LDB25_08445) hslU 1664467..1665870 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  LDB25_RS08465 (LDB25_08450) codY 1665908..1666687 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LDB25_RS08470 (LDB25_08455) flgB 1667041..1667430 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  LDB25_RS08475 (LDB25_08460) flgC 1667430..1667882 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  LDB25_RS08480 (LDB25_08465) fliE 1667893..1668213 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  LDB25_RS08485 (LDB25_08470) fliF 1668256..1669866 (+) 1611 WP_014417768.1 flagellar basal-body MS-ring/collar protein FliF -
  LDB25_RS08490 (LDB25_08475) fliG 1669879..1670895 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  LDB25_RS08495 (LDB25_08480) fliH 1670888..1671643 (+) 756 WP_014417769.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=612463 LDB25_RS08465 WP_003154263.1 1665908..1666687(+) (codY) [Bacillus velezensis strain DJB5]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=612463 LDB25_RS08465 WP_003154263.1 1665908..1666687(+) (codY) [Bacillus velezensis strain DJB5]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATCACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471