Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   EL263_RS08635 Genome accession   NZ_AP018938
Coordinates   1628433..1629704 (+) Length   423 a.a.
NCBI ID   WP_054387466.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ATCC 49619     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1623433..1634704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL263_RS08585 (SPAT_1635) - 1623985..1624501 (-) 517 Protein_1630 GNAT family N-acetyltransferase -
  EL263_RS08590 (SPAT_1636) - 1624498..1624926 (-) 429 WP_050072375.1 NUDIX hydrolase -
  EL263_RS08595 (SPAT_1637) - 1624928..1625995 (-) 1068 WP_000719721.1 site-2 protease family protein -
  EL263_RS08600 (SPAT_1638) - 1626014..1626484 (-) 471 WP_054387465.1 DUF3013 family protein -
  EL263_RS08605 (SPAT_1639) - 1626775..1627227 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  EL263_RS08610 - 1627264..1627443 (-) 180 WP_054387476.1 type II toxin-antitoxin system HicA family toxin -
  EL263_RS08615 - 1627580..1627759 (-) 180 WP_001809903.1 hypothetical protein -
  EL263_RS08625 (SPAT_1640) - 1627924..1628163 (-) 240 WP_000818078.1 hypothetical protein -
  EL263_RS08635 (SPAT_1641) rarA 1628433..1629704 (+) 1272 WP_054387466.1 replication-associated recombination protein A Machinery gene
  EL263_RS08645 (SPAT_1643) - 1630249..1631568 (-) 1320 WP_000502560.1 glycoside hydrolase family 32 protein -
  EL263_RS08650 (SPAT_1644) - 1631578..1633194 (-) 1617 WP_050278164.1 ABC transporter substrate-binding protein -
  EL263_RS08655 (SPAT_1645) - 1633223..1634113 (-) 891 WP_000797956.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46947.29 Da        Isoelectric Point: 5.7330

>NTDB_id=61246 EL263_RS08635 WP_054387466.1 1628433..1629704(+) (rarA) [Streptococcus pneumoniae strain ATCC 49619]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIHHITLDIMENSLQRSYITMDNDGDGHY
DVLSALQKSIRGSDVDASLHYTARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDHLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=61246 EL263_RS08635 WP_054387466.1 1628433..1629704(+) (rarA) [Streptococcus pneumoniae strain ATCC 49619]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCCG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
ACCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAATGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATTCGTGGCTCAGATGTGGATGCCAGTCTCCACTATACTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCATTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.946

96.69

0.56

Multiple sequence alignment