Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   NOQ96_RS29025 Genome accession   NZ_CP101885
Coordinates   6177144..6177740 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain M27432     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6172144..6182740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOQ96_RS29005 (NOQ96_29005) aroK 6173275..6173793 (-) 519 WP_003095833.1 shikimate kinase AroK -
  NOQ96_RS29010 (NOQ96_29010) pilQ 6173805..6175949 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  NOQ96_RS29015 (NOQ96_29015) comL/pilP 6176003..6176527 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  NOQ96_RS29020 (NOQ96_29020) pilO 6176524..6177147 (-) 624 WP_003095838.1 type 4a pilus biogenesis protein PilO Machinery gene
  NOQ96_RS29025 (NOQ96_29025) pilN 6177144..6177740 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  NOQ96_RS29030 (NOQ96_29030) pilM 6177740..6178804 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  NOQ96_RS29035 (NOQ96_29035) - 6178989..6181460 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=612178 NOQ96_RS29025 WP_003095839.1 6177144..6177740(-) (pilN) [Pseudomonas aeruginosa strain M27432]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=612178 NOQ96_RS29025 WP_003095839.1 6177144..6177740(-) (pilN) [Pseudomonas aeruginosa strain M27432]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCGGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGATTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGTCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATTGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369