Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LGO15_RS17535 Genome accession   NZ_CP084622
Coordinates   3415458..3417824 (-) Length   788 a.a.
NCBI ID   WP_226085411.1    Uniprot ID   -
Organism   Mesobacillus sp. S13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3410458..3422824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGO15_RS17520 dtd 3411984..3412424 (-) 441 WP_226085410.1 D-aminoacyl-tRNA deacylase -
  LGO15_RS17525 - 3412459..3414651 (-) 2193 WP_167832847.1 RelA/SpoT family protein -
  LGO15_RS17530 - 3414955..3415467 (-) 513 WP_167832846.1 adenine phosphoribosyltransferase -
  LGO15_RS17535 recJ 3415458..3417824 (-) 2367 WP_226085411.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LGO15_RS17540 - 3418160..3418474 (-) 315 WP_226085412.1 lipopolysaccharide assembly LapA domain-containing protein -
  LGO15_RS17545 - 3418496..3419377 (-) 882 WP_413231408.1 cation diffusion facilitator family transporter -
  LGO15_RS17550 secDF 3419582..3421852 (-) 2271 WP_226085414.1 protein translocase subunit SecDF -
  LGO15_RS17555 - 3422036..3422332 (-) 297 WP_226085415.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88128.75 Da        Isoelectric Point: 4.8759

>NTDB_id=612022 LGO15_RS17535 WP_226085411.1 3415458..3417824(-) (recJ) [Mesobacillus sp. S13]
MLKPKSRWIVKKSDQTIIDSLAKDLNITHLTASLLVNRGLDTVEDARYFLFGEKSEFHDPFLLKDMDKAVERINEAIETQ
EPILVFGDYDADGVSSTTVMMKALDELGANADYYIPNRFTEGYGPNEKAFRSAADSGVGLIITVDTGISALHEATVAKEL
GIDLIITDHHEPGPVLPDAFAIIHPKLEDSVYPFKDLAGVGVAFKVAHALLGRIPEHLLEFAAIGTIADLVPLMGENRLI
ALRGIEKLKSSQTHGLNALLKLAKTDRSSIDEETIGFMIGPRVNAAGRLGSADPAVQLMMTQDPEEAMMLAEEIDSINKE
RQNIVSQIAEEAVAEVEMNYPIQDNSVLVVGKEGWNAGVIGIVASKLVEKYYRPTIVLSFDKEKGLAKGSARSIAGFDLF
KNLSTCIDILPHFGGHPMAAGMTLNLSDVDELRARLNTLAKEQLKEEDLVPVSHIDASIEVKEITIETINELGKLSPYGV
SNPKPKVMINEANISTLRKIGADQSHLKLALEEEGTVIDGIGFGFGHLHDHISPSSKLSVIGELSINEWNNIKKPQIFLR
DVAVKSWQLFDFRGLKRLEKLPDMIPGDHIKWILFNPDLKNKFSPIIGDSLEVVTADDQAQQIELDQSYVVLLDLPPSKE
ILENLFSGKNPGRVYVHFYKESSDFFTTMPTREHFKWFYAFLAKKGPFDLKRYGDDLAKHRGWTKETVDFMSQVFFELDF
VKINNGFISLEENVPKRDLTESKTYQHKVQAFTLENELLYSSYEQLKNWFDQFIQESVKNEEAIIQWI

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=612022 LGO15_RS17535 WP_226085411.1 3415458..3417824(-) (recJ) [Mesobacillus sp. S13]
ATGTTAAAGCCAAAATCAAGGTGGATTGTAAAAAAATCCGACCAGACAATAATAGATTCACTCGCTAAGGACTTGAACAT
AACTCATCTGACTGCTTCTCTGCTAGTCAATCGCGGACTGGATACCGTGGAAGATGCCCGGTATTTTTTATTTGGAGAAA
AAAGCGAATTTCATGACCCCTTTTTGTTAAAGGACATGGACAAGGCAGTTGAGCGGATCAATGAGGCTATCGAAACGCAG
GAGCCCATATTAGTATTTGGTGATTATGATGCAGATGGTGTGAGCAGTACGACGGTCATGATGAAAGCCCTGGATGAGCT
GGGGGCAAACGCCGACTATTACATACCGAACCGTTTTACAGAAGGATACGGCCCTAATGAAAAAGCATTCCGAAGTGCTG
CAGACAGCGGAGTTGGCTTGATCATAACTGTCGATACGGGCATTTCAGCTCTTCATGAAGCAACTGTTGCCAAAGAGTTA
GGCATCGACTTGATTATAACGGATCACCATGAACCTGGACCGGTCTTGCCAGATGCATTTGCGATCATCCATCCAAAGCT
GGAAGACAGTGTATACCCTTTCAAGGACTTGGCTGGTGTCGGAGTCGCTTTTAAGGTTGCCCATGCGCTGCTAGGAAGGA
TCCCTGAGCATTTGCTTGAGTTTGCGGCAATCGGGACAATTGCAGACCTTGTACCTCTCATGGGAGAGAATAGGCTGATT
GCCTTGAGGGGAATAGAGAAATTGAAGTCGAGCCAGACGCATGGTTTGAATGCGCTGCTTAAACTCGCTAAGACTGATAG
ATCTTCCATAGATGAAGAAACGATCGGGTTCATGATAGGACCGAGGGTTAACGCCGCCGGGAGACTTGGCAGCGCGGATC
CTGCCGTGCAATTGATGATGACACAAGATCCTGAAGAAGCGATGATGCTTGCGGAAGAAATTGATTCAATCAATAAAGAG
CGTCAAAATATAGTCTCACAAATTGCTGAAGAAGCAGTTGCTGAAGTGGAAATGAATTACCCAATACAAGACAACTCGGT
GCTTGTCGTCGGCAAAGAAGGCTGGAATGCAGGAGTCATTGGCATCGTAGCTTCCAAGCTCGTTGAAAAATACTACCGGC
CAACCATTGTTCTTAGTTTTGACAAAGAGAAGGGGCTTGCCAAGGGTTCAGCACGCAGTATTGCCGGTTTCGACCTTTTT
AAAAATCTATCAACCTGCATAGACATCCTGCCGCATTTTGGGGGACATCCAATGGCTGCGGGCATGACATTGAATTTAAG
CGATGTGGATGAATTAAGGGCAAGATTGAATACACTCGCAAAAGAGCAGCTTAAAGAGGAAGATTTAGTTCCTGTATCTC
ATATCGATGCCAGTATAGAAGTTAAAGAGATTACGATTGAAACCATAAATGAACTTGGAAAGCTTTCGCCATATGGTGTG
AGCAATCCTAAGCCAAAGGTCATGATTAATGAAGCTAATATTTCAACCCTGAGAAAGATAGGAGCAGATCAGTCACATCT
TAAGCTTGCGTTGGAAGAGGAAGGTACTGTGATTGATGGGATCGGATTCGGATTCGGCCATCTTCATGATCATATTTCAC
CAAGCTCCAAGCTATCGGTCATTGGCGAACTGTCCATCAATGAATGGAACAATATCAAGAAGCCGCAGATTTTTCTCAGG
GATGTAGCGGTCAAATCCTGGCAGCTATTCGATTTCCGCGGACTTAAAAGACTGGAAAAACTTCCTGACATGATTCCAGG
GGATCATATCAAATGGATTCTCTTTAATCCAGATTTGAAAAATAAGTTTTCACCTATTATCGGAGACTCGTTGGAAGTCG
TTACTGCCGATGACCAGGCCCAACAAATCGAACTTGATCAATCATATGTTGTTCTTTTGGATCTGCCTCCTTCCAAAGAG
ATACTGGAGAATTTATTTTCCGGGAAAAATCCGGGAAGGGTATATGTCCACTTTTATAAAGAAAGCAGTGATTTCTTCAC
AACAATGCCAACCCGTGAACACTTCAAATGGTTCTACGCATTCCTTGCCAAAAAAGGTCCATTTGATCTAAAACGGTATG
GCGACGACCTGGCCAAGCATAGAGGGTGGACAAAAGAAACAGTAGATTTCATGTCGCAGGTGTTTTTTGAACTAGATTTT
GTTAAAATAAACAATGGGTTTATTTCACTAGAAGAAAATGTCCCCAAAAGGGATCTGACTGAATCCAAAACATATCAGCA
CAAGGTGCAAGCATTCACTCTTGAAAATGAGTTGCTCTACTCTTCGTATGAGCAATTGAAGAATTGGTTTGACCAGTTCA
TTCAAGAGTCGGTGAAAAATGAGGAGGCAATTATTCAATGGATTTGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(315-438)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.806

99.492

0.525