Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LGO15_RS17455 Genome accession   NZ_CP084622
Coordinates   3394642..3397104 (-) Length   820 a.a.
NCBI ID   WP_226085402.1    Uniprot ID   -
Organism   Mesobacillus sp. S13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3389642..3402104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGO15_RS17430 - 3391285..3392364 (-) 1080 WP_226087925.1 AI-2E family transporter -
  LGO15_RS17435 - 3392533..3392658 (-) 126 WP_225649961.1 YrzQ family protein -
  LGO15_RS17440 - 3392692..3392883 (-) 192 WP_023627194.1 hypothetical protein -
  LGO15_RS17445 - 3392894..3393370 (-) 477 WP_226085400.1 PRC-barrel domain-containing protein -
  LGO15_RS17450 - 3393574..3394584 (+) 1011 WP_226085401.1 N-acetylmuramoyl-L-alanine amidase -
  LGO15_RS17455 recD2 3394642..3397104 (-) 2463 WP_226085402.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LGO15_RS17460 - 3397137..3397796 (-) 660 WP_226085403.1 tetratricopeptide repeat protein -
  LGO15_RS17465 mnmA 3397948..3399063 (-) 1116 WP_226085404.1 tRNA 2-thiouridine(34) synthase MnmA -
  LGO15_RS17470 - 3399108..3400262 (-) 1155 WP_226085405.1 cysteine desulfurase family protein -
  LGO15_RS17475 cymR 3400563..3400985 (-) 423 WP_167831660.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 820 a.a.        Molecular weight: 92392.23 Da        Isoelectric Point: 4.6977

>NTDB_id=612021 LGO15_RS17455 WP_226085402.1 3394642..3397104(-) (recD2) [Mesobacillus sp. S13]
MDKQDSLDLFSEQGKFMKGKHLVTIFHNEQNLYTVLRIRVEETNEQYEDKEAVITGYFPRIHEQESYVFFGEIKEHPKFG
AQFHATHFRKDLPQSKQGIISYLSSDLFKGIGKKTAEKIVDTLGEKAITRIIENPSVLEQIPKLASEKAKELYDTLMEHQ
GLEQVMVALNEYGFGPQLSMKIYQVYKEKAIEVIQNNPYKLVEDIEGIGFGRADELGCQLGLTGNHPDRIKAACLYTLES
SSIQGGHVFMEAEELLVDVKKLLEDNQNIEIQFTDISNEIIKLGEEGKLVAEEQRIYLPSLYYSEKGLVVNIKRILEQTE
YENQFPESEFLLALGELEERLGVQYGPSQKEAIQTALMSPMMILTGGPGTGKTTVIKGIVELYAELHGCSLDPKDYKKEE
PYPFLLAAPTGRAAKRMTESTGLPAVTIHRLLRWNGAEGFDHDEDQPLDGKILIIDETSMVDIWLAHQLFKSLPDNIQVI
VVGDEDQLPSVGPGQVLKDLLDSERVPTVRLTDIYRQAEGSSIIELAHQIKKGSMPEDISAQQPDRSFIKCTTSQIPQVV
EKVVANAKKKGYSPRNIQVLAPMYRGPAGIDRLNELLQELFNPNDDGTRKELAFGDVKYRIGDKVLQLVNQPEANVFNGD
MGEVVAIFYAKENTEKQDQLIVSFDGIEVTYNRPDLSQITHAYCCSVHKSQGSEFPIVVLPVVKSYYRMLRRNLIYTAIT
RSKQFLILVGEEDALKMGIERGEDTARNTTLVEKLVQLLPELNGEEGTGGQGKLQSKQKLQTEEHIDQDEEVDFIDIIKK
ADPMIGMGNLTPYDFMEEGS

Nucleotide


Download         Length: 2463 bp        

>NTDB_id=612021 LGO15_RS17455 WP_226085402.1 3394642..3397104(-) (recD2) [Mesobacillus sp. S13]
TTGGATAAACAGGACTCGCTCGATTTGTTTTCAGAACAGGGTAAGTTCATGAAAGGAAAGCATCTTGTTACCATTTTTCA
TAATGAACAAAATCTTTATACAGTCCTGAGAATCAGGGTTGAGGAAACAAATGAGCAGTACGAGGATAAAGAAGCAGTCA
TAACAGGGTATTTCCCCCGGATTCATGAACAAGAGTCTTACGTTTTCTTCGGTGAGATAAAAGAGCATCCTAAGTTCGGT
GCACAATTCCATGCGACTCATTTCCGCAAGGACCTGCCACAGTCAAAGCAGGGGATCATCAGCTACTTGTCAAGTGATCT
ATTCAAAGGCATCGGAAAAAAAACGGCTGAGAAAATTGTCGATACGCTCGGAGAAAAGGCGATAACGAGGATAATTGAGA
ACCCGTCAGTGCTTGAACAGATTCCGAAGCTGGCATCTGAAAAAGCAAAGGAGCTTTATGACACATTGATGGAGCATCAG
GGCCTTGAACAAGTGATGGTGGCATTGAACGAATATGGTTTTGGTCCTCAGCTGTCGATGAAAATTTATCAGGTTTATAA
AGAAAAGGCGATTGAAGTAATTCAGAACAACCCTTATAAGCTTGTGGAGGATATCGAAGGCATCGGGTTCGGCAGGGCGG
ACGAGCTGGGATGTCAGCTCGGCCTTACGGGCAACCATCCGGATCGGATCAAGGCGGCCTGTCTATATACTCTCGAGAGT
TCTAGCATCCAGGGCGGGCATGTCTTCATGGAAGCAGAAGAGCTGCTCGTTGATGTGAAAAAACTACTTGAGGACAATCA
GAATATAGAAATACAATTCACTGATATCTCGAACGAAATCATTAAGCTTGGTGAAGAAGGTAAGCTGGTTGCTGAAGAGC
AGAGAATCTATTTGCCGTCCCTTTATTATTCGGAAAAAGGACTGGTTGTGAATATCAAAAGGATTCTTGAGCAAACAGAA
TATGAAAATCAATTTCCTGAATCGGAGTTTCTTCTTGCGCTTGGAGAGCTTGAGGAGCGTTTGGGTGTCCAGTACGGACC
AAGCCAGAAAGAAGCAATCCAGACTGCGCTGATGTCACCGATGATGATTCTGACAGGAGGTCCTGGCACGGGGAAAACGA
CGGTCATCAAGGGAATTGTTGAGCTATATGCTGAGCTTCACGGATGTTCGCTGGACCCGAAAGACTATAAAAAAGAAGAG
CCATATCCGTTCTTGCTGGCAGCTCCGACCGGCCGGGCGGCTAAGAGGATGACTGAGTCAACCGGATTGCCTGCCGTGAC
TATACATAGGCTGCTGCGCTGGAATGGTGCAGAAGGATTTGACCATGATGAAGACCAGCCGCTTGATGGGAAAATTCTGA
TTATCGATGAAACATCTATGGTTGATATATGGCTGGCTCATCAATTGTTCAAATCGCTGCCTGATAATATTCAGGTCATC
GTGGTCGGAGATGAAGACCAGCTCCCATCTGTAGGTCCAGGCCAGGTCTTAAAGGATCTATTGGATTCAGAAAGGGTCCC
GACGGTCAGGCTGACGGATATTTACAGACAGGCTGAAGGCTCATCGATCATCGAACTCGCCCACCAAATCAAGAAGGGAT
CCATGCCAGAGGATATTTCCGCACAACAGCCAGACCGTTCGTTTATTAAATGTACAACCAGCCAGATTCCTCAGGTAGTT
GAAAAGGTTGTCGCAAATGCCAAAAAGAAAGGGTATTCCCCAAGGAACATCCAGGTGCTGGCTCCAATGTACCGGGGCCC
AGCAGGCATTGACCGTTTGAATGAACTACTGCAGGAACTGTTCAATCCGAATGATGATGGTACCAGGAAAGAGCTTGCAT
TTGGCGATGTGAAATACCGCATCGGTGATAAGGTCCTCCAGTTGGTCAATCAGCCTGAAGCAAATGTTTTCAATGGCGAT
ATGGGTGAAGTTGTCGCGATATTTTATGCTAAGGAAAACACAGAAAAACAAGATCAGCTGATCGTTTCTTTCGATGGAAT
TGAAGTCACCTATAACAGACCAGACCTATCGCAAATCACCCATGCATATTGCTGTTCGGTGCATAAATCCCAGGGAAGTG
AATTTCCAATCGTCGTCCTTCCAGTGGTCAAAAGCTACTACAGAATGTTGCGCAGGAATCTGATATATACCGCGATTACC
AGGAGTAAGCAATTCCTCATACTAGTCGGAGAAGAGGATGCACTGAAAATGGGGATTGAACGCGGTGAAGATACAGCAAG
GAATACAACGCTCGTCGAGAAGCTTGTACAATTGCTTCCTGAATTAAATGGTGAAGAGGGAACAGGGGGACAAGGCAAGC
TGCAGTCGAAACAAAAGCTTCAAACTGAAGAACACATCGATCAAGACGAAGAAGTCGATTTTATCGACATCATCAAAAAA
GCAGATCCGATGATCGGGATGGGAAACCTGACTCCTTATGATTTCATGGAGGAAGGGAGCTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-553)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.52

99.512

0.612