Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LDO17_RS18080 Genome accession   NZ_CP084539
Coordinates   3809725..3812100 (-) Length   791 a.a.
NCBI ID   WP_048683738.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain Ant232     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3745814..3812100 3809725..3812100 within 0


Gene organization within MGE regions


Location: 3745814..3812100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO17_RS17805 - 3746340..3749312 (-) 2973 WP_048681352.1 hypothetical protein -
  LDO17_RS17810 - 3749518..3751317 (-) 1800 WP_048681356.1 ABC transporter ATP-binding protein -
  LDO17_RS17815 - 3751680..3752153 (-) 474 WP_048681359.1 lasso peptide biosynthesis B2 protein -
  LDO17_RS17820 - 3752203..3752502 (-) 300 WP_048681361.1 lasso peptide biosynthesis PqqD family chaperone -
  LDO17_RS17825 - 3752496..3753431 (-) 936 WP_048681364.1 aldolase -
  LDO17_RS17830 - 3753524..3753658 (-) 135 WP_105718777.1 paeninodin family lasso peptide -
  LDO17_RS17835 - 3753673..3755610 (-) 1938 WP_048681367.1 lasso peptide isopeptide bond-forming cyclase -
  LDO17_RS28760 - 3756383..3756524 (-) 142 Protein_3490 IS3 family transposase -
  LDO17_RS17840 - 3757056..3758198 (-) 1143 WP_048681437.1 nucleotidyltransferase family protein -
  LDO17_RS17845 - 3758522..3759817 (-) 1296 WP_105718778.1 beta-galactosidase -
  LDO17_RS17850 - 3759989..3761041 (-) 1053 WP_048681371.1 EpsG family protein -
  LDO17_RS17855 - 3761745..3763160 (-) 1416 WP_048681375.1 oligosaccharide flippase family protein -
  LDO17_RS17860 - 3763767..3764846 (-) 1080 WP_048681380.1 polysaccharide pyruvyl transferase family protein -
  LDO17_RS17865 - 3765085..3765981 (-) 897 WP_048681384.1 beta-1,6-N-acetylglucosaminyltransferase -
  LDO17_RS17870 - 3766151..3767164 (-) 1014 WP_048681387.1 glycosyltransferase -
  LDO17_RS17875 - 3767225..3768355 (-) 1131 WP_048681443.1 glycosyltransferase -
  LDO17_RS17880 - 3768397..3769077 (-) 681 WP_226990430.1 sugar transferase -
  LDO17_RS17885 galU 3769096..3769980 (-) 885 WP_048681394.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LDO17_RS17890 - 3770085..3770849 (-) 765 WP_048681397.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -
  LDO17_RS17895 - 3770981..3771658 (-) 678 WP_105718780.1 CpsD/CapB family tyrosine-protein kinase -
  LDO17_RS17900 - 3771697..3772377 (-) 681 WP_048681407.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  LDO17_RS17905 - 3772845..3773159 (+) 315 WP_048681410.1 helix-turn-helix domain-containing protein -
  LDO17_RS17910 - 3773254..3773466 (-) 213 WP_048681413.1 hypothetical protein -
  LDO17_RS17915 - 3775023..3775214 (+) 192 WP_048681418.1 hypothetical protein -
  LDO17_RS17920 - 3775204..3775431 (+) 228 WP_048681421.1 hypothetical protein -
  LDO17_RS17925 - 3775611..3775991 (+) 381 WP_226990431.1 helix-turn-helix domain-containing protein -
  LDO17_RS17930 - 3776287..3778170 (-) 1884 WP_048681426.1 S8 family peptidase -
  LDO17_RS28765 - 3778721..3779008 (-) 288 WP_349306462.1 ATPase, T2SS/T4P/T4SS family -
  LDO17_RS28660 - 3779127..3779252 (-) 126 WP_264371008.1 hypothetical protein -
  LDO17_RS17940 - 3780162..3781211 (-) 1050 WP_048684369.1 hypothetical protein -
  LDO17_RS17945 - 3782555..3782977 (+) 423 WP_048684371.1 hypothetical protein -
  LDO17_RS17950 - 3783139..3783717 (+) 579 WP_048684373.1 recombinase family protein -
  LDO17_RS17955 - 3783903..3784724 (-) 822 WP_048684375.1 hypothetical protein -
  LDO17_RS17960 - 3785075..3785872 (-) 798 WP_048684376.1 recombinase family protein -
  LDO17_RS28665 - 3785945..3786100 (+) 156 WP_153246128.1 hypothetical protein -
  LDO17_RS17970 - 3786181..3786888 (-) 708 WP_034308744.1 ABC transporter ATP-binding protein -
  LDO17_RS17975 - 3786888..3787670 (-) 783 WP_034308746.1 ABC transporter ATP-binding protein -
  LDO17_RS17980 - 3787642..3788607 (-) 966 WP_048684378.1 branched-chain amino acid ABC transporter permease -
  LDO17_RS17985 - 3788621..3789499 (-) 879 WP_034308751.1 branched-chain amino acid ABC transporter permease -
  LDO17_RS17990 - 3789662..3790840 (-) 1179 WP_048684380.1 ABC transporter substrate-binding protein -
  LDO17_RS17995 - 3791389..3792096 (-) 708 WP_048684382.1 ABC transporter ATP-binding protein -
  LDO17_RS18000 - 3792096..3792875 (-) 780 WP_048684384.1 ABC transporter ATP-binding protein -
  LDO17_RS18005 - 3792850..3793821 (-) 972 WP_048684386.1 branched-chain amino acid ABC transporter permease -
  LDO17_RS18010 - 3793835..3794713 (-) 879 WP_048684388.1 branched-chain amino acid ABC transporter permease -
  LDO17_RS18015 - 3794790..3795977 (-) 1188 WP_048684390.1 ABC transporter substrate-binding protein -
  LDO17_RS18020 - 3796164..3796925 (-) 762 WP_048684392.1 tRNA threonylcarbamoyladenosine dehydratase -
  LDO17_RS18025 - 3797037..3798143 (-) 1107 WP_235443516.1 M20 family metallopeptidase -
  LDO17_RS18030 - 3798653..3799624 (-) 972 WP_048678669.1 NERD domain-containing protein -
  LDO17_RS18035 - 3799868..3800077 (+) 210 WP_235443517.1 hypothetical protein -
  LDO17_RS18045 aspS 3800642..3802411 (-) 1770 WP_048683760.1 aspartate--tRNA ligase -
  LDO17_RS18050 hisS 3802424..3803695 (-) 1272 WP_034308774.1 histidine--tRNA ligase -
  LDO17_RS18055 - 3804110..3804283 (-) 174 WP_048683752.1 hypothetical protein -
  LDO17_RS18060 - 3804413..3806182 (+) 1770 WP_048683750.1 SH3 domain-containing protein -
  LDO17_RS18065 dtd 3806247..3806690 (-) 444 WP_048683742.1 D-aminoacyl-tRNA deacylase -
  LDO17_RS18070 - 3806706..3808904 (-) 2199 WP_034308787.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LDO17_RS18075 - 3809222..3809734 (-) 513 WP_034308789.1 adenine phosphoribosyltransferase -
  LDO17_RS18080 recJ 3809725..3812100 (-) 2376 WP_048683738.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 88985.60 Da        Isoelectric Point: 4.8039

>NTDB_id=611774 LDO17_RS18080 WP_048683738.1 3809725..3812100(-) (recJ) [Peribacillus frigoritolerans strain Ant232]
MLKPKTRWNLRTADENKVAVLAEELHITPLVAALLVNRGLDTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIKEAIQNG
EKIRIFGDYDADGVTSTTVMMTALTRLGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAVAEAKLAAEL
GMDYILTDHHEPGPQLPEALAIIHPKLEDSSYPFKELAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLQGENRVI
AAKGIEQLRLTRRPGLVALMKVANVQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSASLEEAMELANEINDINKE
RQEMVAAMAEEAIAEVEENFPPESNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSYDRDKGLAKGSARSIVGFDLF
QSLSQCREMLPHFGGHPMAAGMTLKIEDVQELRDRMNLIAKEELNEEDFTPITNLDGATTLAEVSVQTIQEMSLLAPFGV
TNPKPKILIDSVQLSSVRKIGANQNHLKVQLEDGEKHKLDGVGFGLGHFVDEIAPHAEVSVIGELSINEWNNMKKPQIFV
QDVSVDHWQLFDYRGKGQAEKWLADIPAQNRKIVIFSEDIYSRYPFLQNHPDLVHIENELDAEQLDCFEGHLVLMDMPPS
REYLKRVIAKKNPSRIYAHLSHEQDHFLSTMPTRDHFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVDFISKVFFEL
DFVTIENGLIMLTTNAKKRDLSESESYTRKKEQFELEQELVYSSYQQLFDWFNHYLVHEATDLEEEIKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=611774 LDO17_RS18080 WP_048683738.1 3809725..3812100(-) (recJ) [Peribacillus frigoritolerans strain Ant232]
ATGTTAAAACCAAAAACCCGGTGGAACTTGCGAACTGCCGATGAAAACAAAGTTGCTGTACTAGCTGAAGAGCTTCATAT
CACACCTTTGGTTGCAGCCCTGCTTGTGAATCGAGGCCTGGATACGATTGAAAGTGCCCGATCGTTTTTATTTGTAAAAA
ATCAAACTTTTCATGACCCATTTTTATTGAAGGATATGGATAAAGCAGTATATAGAATAAAGGAAGCCATTCAAAATGGA
GAAAAAATACGTATATTCGGTGATTATGATGCGGATGGCGTGACATCGACCACAGTGATGATGACGGCGCTGACAAGATT
GGGGGCCGATGTTGATTTTTATATCCCTAATCGGTTTACAGAAGGATATGGTCCGAATCCGATGGCATTCCGCCTTGCAG
CCGAGCAAGGTGTGAAGGTATTAATAACCGTCGATACCGGAATCTCCGCAGTCGCTGAAGCGAAACTTGCCGCCGAGCTA
GGCATGGATTATATTTTGACTGACCACCATGAACCGGGACCGCAATTGCCTGAGGCATTGGCGATCATCCATCCTAAACT
GGAGGACAGTTCCTATCCATTTAAAGAACTTGCCGGAGTAGGAGTCGCATTTAAGCTTGCACACGCCTTGCTTGGGGAAT
TGCCTGAGGATTTGCTAGAAATAGCGGCAATCGGGACGATAGCGGATTTAGTGCCTTTACAAGGGGAAAACCGCGTCATT
GCTGCGAAAGGCATCGAGCAGTTACGATTGACTCGCCGCCCGGGACTTGTTGCGTTAATGAAAGTGGCGAATGTTCAGCA
GGAAGCATTGAATGAAGAATCGATCGGATTTGCAATGGCACCGAGGATCAATGCTGTAGGGCGCCTTGGAGATGCCGATC
CCGCTGTTGATTTATTGATGTCCGCAAGTCTGGAAGAAGCAATGGAACTTGCTAATGAAATCAACGATATCAATAAAGAG
CGGCAGGAAATGGTTGCAGCAATGGCTGAGGAAGCGATTGCTGAAGTCGAGGAAAACTTCCCGCCGGAGTCCAATGGCGT
GCTCATCATCGGCAGGGAAGGCTGGAATGCCGGAGTTGTGGGGATTGTGGCCTCTAAACTTGTTGAACGCTTTTACCGGC
CGACGATTGTATTGAGCTATGATCGGGATAAGGGATTAGCTAAAGGTTCTGCTCGGAGCATCGTTGGTTTCGATCTTTTT
CAAAGTCTTTCCCAATGTCGTGAAATGCTGCCTCATTTCGGTGGACATCCCATGGCAGCTGGAATGACGTTGAAAATAGA
AGATGTTCAGGAGCTTAGGGACCGCATGAACTTGATTGCTAAGGAAGAACTGAACGAAGAGGACTTCACACCGATTACAA
ACTTGGACGGTGCTACGACTTTAGCTGAAGTTTCCGTTCAAACGATTCAGGAAATGAGCTTGCTTGCACCATTTGGTGTT
ACGAATCCCAAGCCGAAGATTTTGATAGATTCCGTACAACTTTCAAGTGTCCGCAAAATTGGTGCCAACCAAAATCACTT
GAAGGTTCAGCTGGAAGATGGTGAAAAACACAAACTTGACGGTGTGGGCTTCGGTCTCGGTCATTTTGTCGATGAAATAG
CTCCGCATGCTGAAGTTTCGGTGATTGGAGAGCTCTCCATCAATGAGTGGAATAATATGAAAAAGCCCCAGATCTTTGTC
CAGGATGTCTCGGTGGACCATTGGCAGTTATTCGATTACCGCGGCAAGGGACAGGCAGAGAAGTGGCTTGCCGACATTCC
TGCACAAAACCGGAAAATCGTCATTTTCTCGGAAGATATTTATAGCAGATATCCATTTTTGCAAAACCATCCAGATCTCG
TTCATATCGAGAATGAACTGGATGCTGAGCAGCTCGACTGCTTCGAAGGGCATTTGGTACTCATGGACATGCCGCCGTCC
AGGGAATATTTGAAACGGGTGATTGCCAAAAAGAACCCTTCCCGTATCTACGCTCACCTTTCCCATGAACAGGACCATTT
CTTAAGTACGATGCCGACAAGGGATCATTTTAAATGGTTTTATGCCTTCCTTGCCAAGAAGGGTCCGCTTGATGTGAAAA
GATATGGTGATGACCTGGCCAAATATCGCGGCTGGTCAAGAGATACAGTGGATTTCATTTCTAAGGTGTTTTTTGAGCTT
GATTTTGTTACAATAGAAAATGGGTTAATTATGCTCACAACCAATGCGAAAAAACGCGATCTCAGTGAATCTGAATCGTA
TACAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATC
ATTATTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAATAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(310-437)

RecJ OB domain (RecJ_OB)

(456-562)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.949

99.621

0.547