Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   EL271_RS11795 Genome accession   NZ_AP018937
Coordinates   1388983..1389705 (-) Length   240 a.a.
NCBI ID   WP_001010371.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain HU-OH     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 1383983..1394705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL271_RS07470 (SPOH_1385) - 1386558..1387724 (-) 1167 WP_000521377.1 MalY/PatB family protein -
  EL271_RS07475 (SPOH_1386) - 1387732..1388826 (-) 1095 WP_000031970.1 cystathionine gamma-synthase -
  EL271_RS11795 (SPOH_1387) rcrP 1388983..1389705 (-) 723 WP_001010371.1 ABC transporter ATP-binding protein Regulator
  EL271_RS11800 (SPOH_1388) - 1389778..1390401 (-) 624 WP_000638446.1 ABC transporter ATP-binding protein -
  EL271_RS11805 (SPOH_1389) - 1390405..1390665 (-) 261 WP_000768979.1 hypothetical protein -
  EL271_RS07485 (SPOH_1390) amiA 1390837..1392795 (-) 1959 WP_000748889.1 peptide ABC transporter substrate-binding protein Regulator
  EL271_RS07490 (SPOH_1391) - 1392998..1394620 (-) 1623 WP_000017803.1 polysaccharide biosynthesis protein -

Sequence


Protein


Download         Length: 240 a.a.        Molecular weight: 27132.92 Da        Isoelectric Point: 4.9157

>NTDB_id=61175 EL271_RS11795 WP_001010371.1 1388983..1389705(-) (rcrP) [Streptococcus pneumoniae strain HU-OH]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHSLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=61175 EL271_RS11795 WP_001010371.1 1388983..1389705(-) (rcrP) [Streptococcus pneumoniae strain HU-OH]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATAGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains


Predicted by InterProScan.

(17-167)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363


Multiple sequence alignment